Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
RTF1Q92541 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
RTF1Q92541 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC29.35■■■□□ 2.29
RTF1Q92541 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
RTF1Q92541 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC29.34■■■□□ 2.29
RTF1Q92541 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
RTF1Q92541 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
RTF1Q92541 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
RTF1Q92541 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
RTF1Q92541 ABCB10P4-201ENST00000566803 2184 ntBASIC29.33■■■□□ 2.29
RTF1Q92541 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 BX842568.3-201ENST00000418104 571 ntBASIC29.33■■■□□ 2.29
RTF1Q92541 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 DUX4L4-201ENST00000566884 1269 ntBASIC29.33■■■□□ 2.29
RTF1Q92541 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC29.33■■■□□ 2.29
RTF1Q92541 AC233992.3-201ENST00000607491 485 ntBASIC29.33■■■□□ 2.29
RTF1Q92541 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC29.33■■■□□ 2.29
RTF1Q92541 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 PREB-202ENST00000406567 1910 ntTSL 5 BASIC29.33■■■□□ 2.29
RTF1Q92541 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
RTF1Q92541 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC29.32■■■□□ 2.28
RTF1Q92541 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
RTF1Q92541 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC29.32■■■□□ 2.28
RTF1Q92541 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
RTF1Q92541 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.32■■■□□ 2.28
RTF1Q92541 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.32■■■□□ 2.28
RTF1Q92541 STOX2-205ENST00000513034 807 ntTSL 3 BASIC29.32■■■□□ 2.28
RTF1Q92541 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
RTF1Q92541 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC29.32■■■□□ 2.28
RTF1Q92541 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC29.32■■■□□ 2.28
RTF1Q92541 LINC01529-204ENST00000636474 1715 ntBASIC29.31■■■□□ 2.28
RTF1Q92541 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.31■■■□□ 2.28
RTF1Q92541 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC29.31■■■□□ 2.28
RTF1Q92541 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.31■■■□□ 2.28
RTF1Q92541 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
RTF1Q92541 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
RTF1Q92541 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC29.3■■■□□ 2.28
RTF1Q92541 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.3■■■□□ 2.28
RTF1Q92541 AL499627.2-201ENST00000606283 725 ntBASIC29.3■■■□□ 2.28
RTF1Q92541 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC29.3■■■□□ 2.28
RTF1Q92541 AC133637.1-201ENST00000624115 1537 ntBASIC29.3■■■□□ 2.28
RTF1Q92541 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
RTF1Q92541 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC29.29■■■□□ 2.28
RTF1Q92541 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
RTF1Q92541 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC29.29■■■□□ 2.28
RTF1Q92541 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.29■■■□□ 2.28
RTF1Q92541 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.29■■■□□ 2.28
RTF1Q92541 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
RTF1Q92541 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RTF1Q92541 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC29.28■■■□□ 2.28
RTF1Q92541 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC29.28■■■□□ 2.28
RTF1Q92541 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
RTF1Q92541 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
RTF1Q92541 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
RTF1Q92541 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC29.28■■■□□ 2.28
RTF1Q92541 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC29.28■■■□□ 2.28
RTF1Q92541 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
RTF1Q92541 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
RTF1Q92541 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
RTF1Q92541 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.27■■■□□ 2.28
RTF1Q92541 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
RTF1Q92541 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
RTF1Q92541 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
RTF1Q92541 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
RTF1Q92541 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC29.26■■■□□ 2.27
RTF1Q92541 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
RTF1Q92541 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC29.26■■■□□ 2.27
RTF1Q92541 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
RTF1Q92541 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
RTF1Q92541 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
RTF1Q92541 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC29.25■■■□□ 2.27
RTF1Q92541 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC29.25■■■□□ 2.27
RTF1Q92541 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.25■■■□□ 2.27
RTF1Q92541 MPST-208ENST00000628507 698 ntTSL 5 BASIC29.25■■■□□ 2.27
RTF1Q92541 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC29.25■■■□□ 2.27
RTF1Q92541 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
RTF1Q92541 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
RTF1Q92541 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RTF1Q92541 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC29.24■■■□□ 2.27
RTF1Q92541 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RTF1Q92541 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
RTF1Q92541 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
RTF1Q92541 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC29.23■■■□□ 2.27
RTF1Q92541 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC29.23■■■□□ 2.27
RTF1Q92541 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC29.23■■■□□ 2.27
RTF1Q92541 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
RTF1Q92541 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC29.23■■■□□ 2.27
RTF1Q92541 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.23■■■□□ 2.27
RTF1Q92541 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC29.23■■■□□ 2.27
RTF1Q92541 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
RTF1Q92541 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.23■■■□□ 2.27
RTF1Q92541 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
RTF1Q92541 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC29.22■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms