Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC29.84■■■□□ 2.37
USHBP1Q8N6Y0 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 AC022517.1-201ENST00000592429 346 ntBASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.83■■■□□ 2.37
USHBP1Q8N6Y0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 EI24-213ENST00000618552 1747 ntTSL 5 BASIC29.82■■■□□ 2.36
USHBP1Q8N6Y0 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
USHBP1Q8N6Y0 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC29.81■■■□□ 2.36
USHBP1Q8N6Y0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC29.8■■■□□ 2.36
USHBP1Q8N6Y0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 AICDA-202ENST00000537228 667 ntTSL 5 BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 AC092437.1-201ENST00000624794 1048 ntBASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
USHBP1Q8N6Y0 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 AL499627.2-201ENST00000606283 725 ntBASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
USHBP1Q8N6Y0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 MIR572-201ENST00000384983 95 ntBASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 AC012414.1-201ENST00000556676 535 ntBASIC29.77■■■□□ 2.36
USHBP1Q8N6Y0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
USHBP1Q8N6Y0 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
USHBP1Q8N6Y0 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 AC027612.3-201ENST00000413684 1047 ntBASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
USHBP1Q8N6Y0 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 AC090192.1-201ENST00000517740 490 ntBASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 RARRES2P11-201ENST00000635158 484 ntBASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC29.75■■■□□ 2.35
USHBP1Q8N6Y0 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 AL358852.1-201ENST00000623174 1268 ntBASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
USHBP1Q8N6Y0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC29.73■■■□□ 2.35
USHBP1Q8N6Y0 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.73■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms