Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTCHD3Q3KNS1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.89■■□□□ 1.1
PTCHD3Q3KNS1 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTCHD3Q3KNS1 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.89■■□□□ 1.1
PTCHD3Q3KNS1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTCHD3Q3KNS1 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTCHD3Q3KNS1 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 MIR4466-201ENST00000606121 54 ntBASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 C9orf163-202ENST00000624034 2573 ntBASIC21.89■■□□□ 1.09
PTCHD3Q3KNS1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PTCHD3Q3KNS1 AC079630.1-202ENST00000618127 1840 ntBASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 DUSP8P3-201ENST00000399571 1760 ntBASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PTCHD3Q3KNS1 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 AL512631.2-201ENST00000604634 923 ntBASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PTCHD3Q3KNS1 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PTCHD3Q3KNS1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 AC068473.5-201ENST00000616428 2072 ntBASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PTCHD3Q3KNS1 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PTCHD3Q3KNS1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PTCHD3Q3KNS1 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms