Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LRRK1Q38SD2 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LRRK1Q38SD2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
LRRK1Q38SD2 AC142381.2-201ENST00000566120 298 ntBASIC22.31■■□□□ 1.16
LRRK1Q38SD2 AC093323.1-202ENST00000635031 2045 ntBASIC22.31■■□□□ 1.16
LRRK1Q38SD2 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 AC010525.1-201ENST00000585559 441 ntBASIC22.3■■□□□ 1.16
LRRK1Q38SD2 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
LRRK1Q38SD2 AC136469.2-201ENST00000623944 1028 ntBASIC22.3■■□□□ 1.16
LRRK1Q38SD2 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LRRK1Q38SD2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 AC105265.2-201ENST00000467189 838 ntBASIC22.28■■□□□ 1.16
LRRK1Q38SD2 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
LRRK1Q38SD2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 MIR3181-201ENST00000578512 73 ntBASIC22.27■■□□□ 1.16
LRRK1Q38SD2 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
LRRK1Q38SD2 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
LRRK1Q38SD2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.15
LRRK1Q38SD2 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 AC099791.1-201ENST00000416440 715 ntBASIC22.26■■□□□ 1.15
LRRK1Q38SD2 AL136967.2-201ENST00000623968 743 ntBASIC22.26■■□□□ 1.15
LRRK1Q38SD2 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LRRK1Q38SD2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.25■■□□□ 1.15
LRRK1Q38SD2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 AC092171.4-201ENST00000609130 632 ntBASIC22.24■■□□□ 1.15
LRRK1Q38SD2 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 RARRES2P6-201ENST00000567333 442 ntBASIC22.24■■□□□ 1.15
LRRK1Q38SD2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 RASA4CP-201ENST00000424092 1398 ntBASIC22.24■■□□□ 1.15
LRRK1Q38SD2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
LRRK1Q38SD2 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 AL355001.2-201ENST00000620617 1191 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 AC008764.7-201ENST00000593779 1081 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 AL499627.2-201ENST00000606283 725 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 pRNA.6-201ENST00000610482 90 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 pRNA.5-201ENST00000612139 90 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 pRNA.11-201ENST00000618423 90 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 pRNA.13-201ENST00000619112 90 ntBASIC22.23■■□□□ 1.15
LRRK1Q38SD2 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
LRRK1Q38SD2 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LRRK1Q38SD2 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms