Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKDCP78527 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC16.54■□□□□ 0.24
PRKDCP78527 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.54■□□□□ 0.24
PRKDCP78527 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKDCP78527 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKDCP78527 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PRKDCP78527 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC16.54■□□□□ 0.24
PRKDCP78527 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PRKDCP78527 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PRKDCP78527 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PRKDCP78527 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PRKDCP78527 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKDCP78527 MPST-204ENST00000404393 1329 ntTSL 5 BASIC16.53■□□□□ 0.24
PRKDCP78527 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKDCP78527 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.53■□□□□ 0.24
PRKDCP78527 FAM201B-201ENST00000458407 597 ntBASIC16.53■□□□□ 0.24
PRKDCP78527 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC16.53■□□□□ 0.24
PRKDCP78527 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC16.53■□□□□ 0.24
PRKDCP78527 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKDCP78527 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PRKDCP78527 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PRKDCP78527 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.53■□□□□ 0.24
PRKDCP78527 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKDCP78527 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PRKDCP78527 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKDCP78527 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
PRKDCP78527 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKDCP78527 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PRKDCP78527 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKDCP78527 LHPP-203ENST00000392757 840 ntTSL 3 BASIC16.52■□□□□ 0.24
PRKDCP78527 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PRKDCP78527 KRT19P1-201ENST00000405746 1186 ntBASIC16.52■□□□□ 0.23
PRKDCP78527 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.52■□□□□ 0.23
PRKDCP78527 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.52■□□□□ 0.23
PRKDCP78527 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC16.52■□□□□ 0.23
PRKDCP78527 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.51■□□□□ 0.23
PRKDCP78527 TSPY6P-201ENST00000448518 926 ntBASIC16.51■□□□□ 0.23
PRKDCP78527 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.51■□□□□ 0.23
PRKDCP78527 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC16.51■□□□□ 0.23
PRKDCP78527 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
PRKDCP78527 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 DUSP5P2-201ENST00000426873 1033 ntBASIC16.51■□□□□ 0.23
PRKDCP78527 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 AC133637.1-201ENST00000624115 1537 ntBASIC16.51■□□□□ 0.23
PRKDCP78527 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC16.51■□□□□ 0.23
PRKDCP78527 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.51■□□□□ 0.23
PRKDCP78527 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKDCP78527 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PRKDCP78527 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PRKDCP78527 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PRKDCP78527 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PRKDCP78527 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC16.5■□□□□ 0.23
PRKDCP78527 AC083906.2-201ENST00000511578 360 ntBASIC16.5■□□□□ 0.23
PRKDCP78527 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PRKDCP78527 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PRKDCP78527 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PRKDCP78527 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PRKDCP78527 KRT18P29-201ENST00000397031 1267 ntBASIC16.49■□□□□ 0.23
PRKDCP78527 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.49■□□□□ 0.23
PRKDCP78527 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.49■□□□□ 0.23
PRKDCP78527 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC16.49■□□□□ 0.23
PRKDCP78527 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.49■□□□□ 0.23
PRKDCP78527 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PRKDCP78527 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.49■□□□□ 0.23
PRKDCP78527 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PRKDCP78527 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PRKDCP78527 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PRKDCP78527 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 FAM210CP-201ENST00000445714 574 ntBASIC16.48■□□□□ 0.23
PRKDCP78527 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.48■□□□□ 0.23
PRKDCP78527 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PRKDCP78527 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.48■□□□□ 0.23
PRKDCP78527 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PRKDCP78527 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.47■□□□□ 0.23
PRKDCP78527 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.47■□□□□ 0.23
PRKDCP78527 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
PRKDCP78527 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC16.47■□□□□ 0.23
PRKDCP78527 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms