Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CDH13P55290 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
CDH13P55290 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.88■■□□□ 1.09
CDH13P55290 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.88■■□□□ 1.09
CDH13P55290 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDH13P55290 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.88■■□□□ 1.09
CDH13P55290 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CDH13P55290 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.87■■□□□ 1.09
CDH13P55290 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.87■■□□□ 1.09
CDH13P55290 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH13P55290 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 SNX5-217ENST00000606557 1087 ntBASIC21.87■■□□□ 1.09
CDH13P55290 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH13P55290 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.87■■□□□ 1.09
CDH13P55290 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.87■■□□□ 1.09
CDH13P55290 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CDH13P55290 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CDH13P55290 AL353803.4-201ENST00000565882 1934 ntBASIC21.86■■□□□ 1.09
CDH13P55290 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDH13P55290 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.86■■□□□ 1.09
CDH13P55290 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.86■■□□□ 1.09
CDH13P55290 GUSBP5-202ENST00000510805 1989 ntBASIC21.86■■□□□ 1.09
CDH13P55290 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH13P55290 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CDH13P55290 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
CDH13P55290 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH13P55290 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.85■■□□□ 1.09
CDH13P55290 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.85■■□□□ 1.09
CDH13P55290 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.85■■□□□ 1.09
CDH13P55290 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CDH13P55290 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.85■■□□□ 1.09
CDH13P55290 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDH13P55290 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
CDH13P55290 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.84■■□□□ 1.09
CDH13P55290 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.84■■□□□ 1.09
CDH13P55290 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.84■■□□□ 1.09
CDH13P55290 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
CDH13P55290 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.84■■□□□ 1.09
CDH13P55290 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH13P55290 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH13P55290 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
CDH13P55290 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.84■■□□□ 1.09
CDH13P55290 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.84■■□□□ 1.09
CDH13P55290 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CDH13P55290 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.84■■□□□ 1.09
CDH13P55290 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.84■■□□□ 1.09
CDH13P55290 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDH13P55290 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.84■■□□□ 1.09
CDH13P55290 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH13P55290 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CDH13P55290 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH13P55290 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
CDH13P55290 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH13P55290 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH13P55290 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CDH13P55290 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.83■■□□□ 1.09
CDH13P55290 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CDH13P55290 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CDH13P55290 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.82■■□□□ 1.08
CDH13P55290 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH13P55290 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.82■■□□□ 1.08
CDH13P55290 AC137630.3-201ENST00000607245 391 ntBASIC21.82■■□□□ 1.08
CDH13P55290 AL031848.2-201ENST00000607670 837 ntBASIC21.82■■□□□ 1.08
CDH13P55290 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
CDH13P55290 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
CDH13P55290 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
CDH13P55290 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDH13P55290 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDH13P55290 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CDH13P55290 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.81■■□□□ 1.08
CDH13P55290 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDH13P55290 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH13P55290 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.8■■□□□ 1.08
CDH13P55290 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.8■■□□□ 1.08
CDH13P55290 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH13P55290 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.8■■□□□ 1.08
CDH13P55290 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.8■■□□□ 1.08
CDH13P55290 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDH13P55290 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.8■■□□□ 1.08
CDH13P55290 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.79■■□□□ 1.08
CDH13P55290 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH13P55290 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDH13P55290 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CDH13P55290 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms