Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC29.02■■■□□ 2.24
PTCD1O75127 AC010525.1-201ENST00000585559 441 ntBASIC29.02■■■□□ 2.24
PTCD1O75127 AC092437.1-201ENST00000624794 1048 ntBASIC29.02■■■□□ 2.24
PTCD1O75127 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC29.02■■■□□ 2.24
PTCD1O75127 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC29.02■■■□□ 2.24
PTCD1O75127 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC29.02■■■□□ 2.24
PTCD1O75127 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PTCD1O75127 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
PTCD1O75127 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
PTCD1O75127 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
PTCD1O75127 AC027612.3-201ENST00000413684 1047 ntBASIC29.01■■■□□ 2.23
PTCD1O75127 AL137784.2-201ENST00000607332 1000 ntBASIC29.01■■■□□ 2.23
PTCD1O75127 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC29.01■■■□□ 2.23
PTCD1O75127 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC29.01■■■□□ 2.23
PTCD1O75127 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC29.01■■■□□ 2.23
PTCD1O75127 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC29■■■□□ 2.23
PTCD1O75127 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
PTCD1O75127 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC29■■■□□ 2.23
PTCD1O75127 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
PTCD1O75127 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC29■■■□□ 2.23
PTCD1O75127 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC29■■■□□ 2.23
PTCD1O75127 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC29■■■□□ 2.23
PTCD1O75127 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC28.99■■■□□ 2.23
PTCD1O75127 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.99■■■□□ 2.23
PTCD1O75127 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.99■■■□□ 2.23
PTCD1O75127 AC012414.1-201ENST00000556676 535 ntBASIC28.99■■■□□ 2.23
PTCD1O75127 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC28.99■■■□□ 2.23
PTCD1O75127 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC28.99■■■□□ 2.23
PTCD1O75127 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
PTCD1O75127 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.99■■■□□ 2.23
PTCD1O75127 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
PTCD1O75127 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.97■■■□□ 2.23
PTCD1O75127 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.97■■■□□ 2.23
PTCD1O75127 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 AC123595.1-201ENST00000440769 1046 ntBASIC28.97■■■□□ 2.23
PTCD1O75127 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.97■■■□□ 2.23
PTCD1O75127 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.97■■■□□ 2.23
PTCD1O75127 AL499627.2-201ENST00000606283 725 ntBASIC28.97■■■□□ 2.23
PTCD1O75127 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
PTCD1O75127 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
PTCD1O75127 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC28.96■■■□□ 2.23
PTCD1O75127 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC28.96■■■□□ 2.23
PTCD1O75127 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.96■■■□□ 2.23
PTCD1O75127 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC28.95■■■□□ 2.23
PTCD1O75127 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC28.95■■■□□ 2.22
PTCD1O75127 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.95■■■□□ 2.22
PTCD1O75127 CCDC92B-201ENST00000575506 885 ntBASIC28.95■■■□□ 2.22
PTCD1O75127 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.95■■■□□ 2.22
PTCD1O75127 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.95■■■□□ 2.22
PTCD1O75127 AP003733.4-201ENST00000623785 1697 ntBASIC28.95■■■□□ 2.22
PTCD1O75127 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.95■■■□□ 2.22
PTCD1O75127 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
PTCD1O75127 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.94■■■□□ 2.22
PTCD1O75127 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC28.94■■■□□ 2.22
PTCD1O75127 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
PTCD1O75127 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PTCD1O75127 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PTCD1O75127 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
PTCD1O75127 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC28.93■■■□□ 2.22
PTCD1O75127 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.93■■■□□ 2.22
PTCD1O75127 AL354811.1-201ENST00000610286 706 ntBASIC28.93■■■□□ 2.22
PTCD1O75127 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.93■■■□□ 2.22
PTCD1O75127 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.93■■■□□ 2.22
PTCD1O75127 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
PTCD1O75127 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC28.92■■■□□ 2.22
PTCD1O75127 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
PTCD1O75127 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
PTCD1O75127 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC28.92■■■□□ 2.22
PTCD1O75127 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.92■■■□□ 2.22
PTCD1O75127 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.92■■■□□ 2.22
PTCD1O75127 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
PTCD1O75127 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.92■■■□□ 2.22
PTCD1O75127 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.92■■■□□ 2.22
PTCD1O75127 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
PTCD1O75127 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
PTCD1O75127 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms