Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.2■□□□□ 0.66
XRCC3O43542 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
XRCC3O43542 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
XRCC3O43542 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
XRCC3O43542 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
XRCC3O43542 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
XRCC3O43542 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
XRCC3O43542 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
XRCC3O43542 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.2■□□□□ 0.66
XRCC3O43542 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.19■□□□□ 0.66
XRCC3O43542 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC19.19■□□□□ 0.66
XRCC3O43542 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
XRCC3O43542 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
XRCC3O43542 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.18■□□□□ 0.66
XRCC3O43542 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
XRCC3O43542 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.18■□□□□ 0.66
XRCC3O43542 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.18■□□□□ 0.66
XRCC3O43542 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
XRCC3O43542 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.18■□□□□ 0.66
XRCC3O43542 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
XRCC3O43542 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
XRCC3O43542 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.17■□□□□ 0.66
XRCC3O43542 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 AC079630.1-202ENST00000618127 1840 ntBASIC19.17■□□□□ 0.66
XRCC3O43542 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.17■□□□□ 0.66
XRCC3O43542 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.17■□□□□ 0.66
XRCC3O43542 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
XRCC3O43542 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
XRCC3O43542 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
XRCC3O43542 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
XRCC3O43542 AC131274.2-201ENST00000580697 1507 ntBASIC19.16■□□□□ 0.66
XRCC3O43542 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
XRCC3O43542 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
XRCC3O43542 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
XRCC3O43542 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
XRCC3O43542 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
XRCC3O43542 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.16■□□□□ 0.66
XRCC3O43542 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
XRCC3O43542 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC19.15■□□□□ 0.66
XRCC3O43542 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
XRCC3O43542 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
XRCC3O43542 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.15■□□□□ 0.66
XRCC3O43542 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
XRCC3O43542 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.14■□□□□ 0.65
XRCC3O43542 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.14■□□□□ 0.65
XRCC3O43542 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19.14■□□□□ 0.65
XRCC3O43542 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.14■□□□□ 0.65
XRCC3O43542 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.14■□□□□ 0.65
XRCC3O43542 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.14■□□□□ 0.65
XRCC3O43542 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.14■□□□□ 0.65
XRCC3O43542 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.14■□□□□ 0.65
XRCC3O43542 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
XRCC3O43542 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms