Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC123595.1-201ENST00000440769 1046 ntBASIC28.28■■■□□ 2.12
NPHP1O15259 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.28■■■□□ 2.12
NPHP1O15259 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC28.28■■■□□ 2.12
NPHP1O15259 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.28■■■□□ 2.12
NPHP1O15259 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP1O15259 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP1O15259 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.27■■■□□ 2.12
NPHP1O15259 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP1O15259 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP1O15259 AL354811.1-201ENST00000610286 706 ntBASIC28.27■■■□□ 2.12
NPHP1O15259 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
NPHP1O15259 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
NPHP1O15259 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.26■■■□□ 2.11
NPHP1O15259 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.26■■■□□ 2.11
NPHP1O15259 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 AC133637.1-201ENST00000624115 1537 ntBASIC28.26■■■□□ 2.11
NPHP1O15259 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.26■■■□□ 2.11
NPHP1O15259 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP1O15259 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP1O15259 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP1O15259 AC091060.1-201ENST00000623524 1766 ntBASIC28.25■■■□□ 2.11
NPHP1O15259 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.25■■■□□ 2.11
NPHP1O15259 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.25■■■□□ 2.11
NPHP1O15259 AC092437.1-201ENST00000624794 1048 ntBASIC28.25■■■□□ 2.11
NPHP1O15259 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP1O15259 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.25■■■□□ 2.11
NPHP1O15259 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC28.25■■■□□ 2.11
NPHP1O15259 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP1O15259 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP1O15259 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
NPHP1O15259 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC28.24■■■□□ 2.11
NPHP1O15259 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.24■■■□□ 2.11
NPHP1O15259 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP1O15259 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP1O15259 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
NPHP1O15259 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC28.24■■■□□ 2.11
NPHP1O15259 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP1O15259 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP1O15259 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP1O15259 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.23■■■□□ 2.11
NPHP1O15259 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP1O15259 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP1O15259 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP1O15259 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.23■■■□□ 2.11
NPHP1O15259 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP1O15259 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP1O15259 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC28.23■■■□□ 2.11
NPHP1O15259 EI24-204ENST00000527235 1625 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP1O15259 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP1O15259 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP1O15259 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP1O15259 CCDC92B-201ENST00000575506 885 ntBASIC28.22■■■□□ 2.11
NPHP1O15259 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC28.22■■■□□ 2.11
NPHP1O15259 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
NPHP1O15259 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP1O15259 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.21■■■□□ 2.11
NPHP1O15259 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP1O15259 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP1O15259 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC28.21■■■□□ 2.11
NPHP1O15259 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP1O15259 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP1O15259 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.2■■■□□ 2.1
NPHP1O15259 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP1O15259 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP1O15259 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP1O15259 NTF6G-201ENST00000591094 616 ntBASIC28.2■■■□□ 2.1
NPHP1O15259 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP1O15259 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP1O15259 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP1O15259 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP1O15259 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC28.19■■■□□ 2.1
NPHP1O15259 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC28.19■■■□□ 2.1
NPHP1O15259 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP1O15259 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP1O15259 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC28.19■■■□□ 2.1
NPHP1O15259 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.19■■■□□ 2.1
NPHP1O15259 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP1O15259 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP1O15259 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC28.18■■■□□ 2.1
NPHP1O15259 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC28.18■■■□□ 2.1
NPHP1O15259 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP1O15259 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP1O15259 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP1O15259 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP1O15259 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
NPHP1O15259 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP1O15259 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP1O15259 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.17■■■□□ 2.1
NPHP1O15259 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.17■■■□□ 2.1
NPHP1O15259 KRT18P14-201ENST00000534205 1250 ntBASIC28.17■■■□□ 2.1
NPHP1O15259 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms