Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CCDC188H7C350 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC23.32■■□□□ 1.32
CCDC188H7C350 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC188H7C350 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC188H7C350 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CCDC188H7C350 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC23.32■■□□□ 1.32
CCDC188H7C350 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.32■■□□□ 1.32
CCDC188H7C350 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCDC188H7C350 AC092053.2-201ENST00000640557 1818 ntBASIC23.31■■□□□ 1.32
CCDC188H7C350 AC139530.1-201ENST00000575312 1977 ntBASIC23.31■■□□□ 1.32
CCDC188H7C350 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC188H7C350 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC188H7C350 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC188H7C350 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CCDC188H7C350 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCDC188H7C350 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.31■■□□□ 1.32
CCDC188H7C350 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC188H7C350 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC188H7C350 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC188H7C350 AC007375.3-201ENST00000600936 2314 ntBASIC23.3■■□□□ 1.32
CCDC188H7C350 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC188H7C350 AC022616.5-201ENST00000518796 181 ntBASIC23.3■■□□□ 1.32
CCDC188H7C350 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC188H7C350 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
CCDC188H7C350 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC188H7C350 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC188H7C350 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CCDC188H7C350 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC23.29■■□□□ 1.32
CCDC188H7C350 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC188H7C350 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC188H7C350 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.28■■□□□ 1.32
CCDC188H7C350 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC188H7C350 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CCDC188H7C350 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC188H7C350 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
CCDC188H7C350 EFS-203ENST00000429593 2610 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC188H7C350 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
CCDC188H7C350 AL353803.4-201ENST00000565882 1934 ntBASIC23.27■■□□□ 1.32
CCDC188H7C350 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC188H7C350 C11orf96-202ENST00000528572 1834 ntBASIC23.27■■□□□ 1.32
CCDC188H7C350 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC188H7C350 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.27■■□□□ 1.32
CCDC188H7C350 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC188H7C350 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC188H7C350 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC188H7C350 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC188H7C350 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
CCDC188H7C350 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC188H7C350 AC019171.1-201ENST00000601251 1056 ntBASIC23.26■■□□□ 1.31
CCDC188H7C350 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC188H7C350 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
CCDC188H7C350 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC188H7C350 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CCDC188H7C350 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC188H7C350 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC188H7C350 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CCDC188H7C350 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC188H7C350 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC23.25■■□□□ 1.31
CCDC188H7C350 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
CCDC188H7C350 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC188H7C350 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.25■■□□□ 1.31
CCDC188H7C350 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC188H7C350 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC188H7C350 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC188H7C350 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC188H7C350 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC188H7C350 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC188H7C350 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC188H7C350 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC188H7C350 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.23■■□□□ 1.31
CCDC188H7C350 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC188H7C350 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC188H7C350 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC188H7C350 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC188H7C350 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC188H7C350 ABHD17AP3-201ENST00000503096 1137 ntBASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms