Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 AC008813.1-201ENST00000536597 885 ntBASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.68■□□□□ 0.42
RBFOX3A6NFN3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RBFOX3A6NFN3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 RNF165-205ENST00000588679 2904 ntBASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.66■□□□□ 0.42
RBFOX3A6NFN3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RBFOX3A6NFN3 AL161729.1-201ENST00000604104 1402 ntBASIC17.64■□□□□ 0.42
RBFOX3A6NFN3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
RBFOX3A6NFN3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
RBFOX3A6NFN3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 RPS2P35-201ENST00000443417 897 ntBASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RBFOX3A6NFN3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms