Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 AC080038.3-201ENST00000623346 1952 ntBASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV1-1A0A0B4J248 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TRAV1-1A0A0B4J248 FAM99A-202ENST00000538190 1989 ntBASIC17.53■□□□□ 0.4
TRAV1-1A0A0B4J248 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-1A0A0B4J248 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TRAV1-1A0A0B4J248 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-1A0A0B4J248 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TRAV1-1A0A0B4J248 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 NRG1-221ENST00000614767 762 ntTSL 5 BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TRAV1-1A0A0B4J248 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TRAV1-1A0A0B4J248 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRAV1-1A0A0B4J248 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 EI24-204ENST00000527235 1625 ntTSL 5 BASIC17.5■□□□□ 0.39
TRAV1-1A0A0B4J248 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 AC010542.4-201ENST00000563151 1910 ntBASIC17.49■□□□□ 0.39
TRAV1-1A0A0B4J248 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRAV1-1A0A0B4J248 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms