Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
H2afb1S4R1E0 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
H2afb1S4R1E0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
H2afb1S4R1E0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
H2afb1S4R1E0 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
H2afb1S4R1E0 Mipep-204ENSMUST00000225043 1548 ntBASIC23.32■■□□□ 1.32
H2afb1S4R1E0 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
H2afb1S4R1E0 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
H2afb1S4R1E0 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
H2afb1S4R1E0 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
H2afb1S4R1E0 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
H2afb1S4R1E0 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
H2afb1S4R1E0 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
H2afb1S4R1E0 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.18■■□□□ 1.3
H2afb1S4R1E0 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.18■■□□□ 1.3
H2afb1S4R1E0 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
H2afb1S4R1E0 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
H2afb1S4R1E0 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
H2afb1S4R1E0 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
H2afb1S4R1E0 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.14■■□□□ 1.29
H2afb1S4R1E0 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
H2afb1S4R1E0 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
H2afb1S4R1E0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
H2afb1S4R1E0 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
H2afb1S4R1E0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
H2afb1S4R1E0 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.08■■□□□ 1.29
H2afb1S4R1E0 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
H2afb1S4R1E0 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
H2afb1S4R1E0 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
H2afb1S4R1E0 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
H2afb1S4R1E0 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
H2afb1S4R1E0 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
H2afb1S4R1E0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.04■■□□□ 1.28
H2afb1S4R1E0 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
H2afb1S4R1E0 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
H2afb1S4R1E0 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
H2afb1S4R1E0 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
H2afb1S4R1E0 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
H2afb1S4R1E0 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
H2afb1S4R1E0 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
H2afb1S4R1E0 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
H2afb1S4R1E0 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
H2afb1S4R1E0 Gm27322-201ENSMUST00000184007 104 ntBASIC23■■□□□ 1.27
H2afb1S4R1E0 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
H2afb1S4R1E0 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC22.99■■□□□ 1.27
H2afb1S4R1E0 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
H2afb1S4R1E0 Gm17082-201ENSMUST00000166043 1091 ntBASIC22.98■■□□□ 1.27
H2afb1S4R1E0 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
H2afb1S4R1E0 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
H2afb1S4R1E0 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
H2afb1S4R1E0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
H2afb1S4R1E0 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
H2afb1S4R1E0 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC22.96■■□□□ 1.27
H2afb1S4R1E0 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.96■■□□□ 1.27
H2afb1S4R1E0 AC166822.3-201ENSMUST00000227394 661 ntBASIC22.95■■□□□ 1.26
H2afb1S4R1E0 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
H2afb1S4R1E0 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
H2afb1S4R1E0 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC22.93■■□□□ 1.26
H2afb1S4R1E0 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
H2afb1S4R1E0 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
H2afb1S4R1E0 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
H2afb1S4R1E0 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC22.92■■□□□ 1.26
H2afb1S4R1E0 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
H2afb1S4R1E0 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
H2afb1S4R1E0 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
H2afb1S4R1E0 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
H2afb1S4R1E0 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
H2afb1S4R1E0 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
H2afb1S4R1E0 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
H2afb1S4R1E0 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
H2afb1S4R1E0 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
H2afb1S4R1E0 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
H2afb1S4R1E0 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
H2afb1S4R1E0 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
H2afb1S4R1E0 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
H2afb1S4R1E0 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
H2afb1S4R1E0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
H2afb1S4R1E0 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
H2afb1S4R1E0 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
H2afb1S4R1E0 Gm9905-201ENSMUST00000065740 1845 ntBASIC22.8■■□□□ 1.24
H2afb1S4R1E0 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
H2afb1S4R1E0 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
H2afb1S4R1E0 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
H2afb1S4R1E0 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
H2afb1S4R1E0 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
H2afb1S4R1E0 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
H2afb1S4R1E0 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
H2afb1S4R1E0 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
H2afb1S4R1E0 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
H2afb1S4R1E0 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
H2afb1S4R1E0 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.74■■□□□ 1.23
H2afb1S4R1E0 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
H2afb1S4R1E0 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
H2afb1S4R1E0 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
H2afb1S4R1E0 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
H2afb1S4R1E0 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.23
H2afb1S4R1E0 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
H2afb1S4R1E0 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
H2afb1S4R1E0 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
H2afb1S4R1E0 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms