Protein–RNA interactions for Protein: Q99M54

Cdca3, Cell division cycle-associated protein 3, mousemouse

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdca3Q99M54 AC166822.3-201ENSMUST00000227394 661 ntBASIC24.09■■□□□ 1.45
Cdca3Q99M54 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Cdca3Q99M54 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Cdca3Q99M54 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
Cdca3Q99M54 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
Cdca3Q99M54 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Cdca3Q99M54 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Cdca3Q99M54 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Cdca3Q99M54 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Cdca3Q99M54 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Cdca3Q99M54 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Cdca3Q99M54 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
Cdca3Q99M54 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Cdca3Q99M54 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Cdca3Q99M54 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Cdca3Q99M54 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC24■■□□□ 1.43
Cdca3Q99M54 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Cdca3Q99M54 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
Cdca3Q99M54 Gm2415-204ENSMUST00000190235 2004 ntBASIC23.95■■□□□ 1.42
Cdca3Q99M54 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Cdca3Q99M54 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Cdca3Q99M54 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
Cdca3Q99M54 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
Cdca3Q99M54 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
Cdca3Q99M54 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Cdca3Q99M54 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.9■■□□□ 1.42
Cdca3Q99M54 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
Cdca3Q99M54 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Cdca3Q99M54 Gm16148-201ENSMUST00000119653 893 ntBASIC23.88■■□□□ 1.41
Cdca3Q99M54 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Cdca3Q99M54 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Cdca3Q99M54 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23.8■■□□□ 1.4
Cdca3Q99M54 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Cdca3Q99M54 Gm6658-202ENSMUST00000209493 1885 ntBASIC23.79■■□□□ 1.4
Cdca3Q99M54 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC23.78■■□□□ 1.4
Cdca3Q99M54 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Cdca3Q99M54 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Cdca3Q99M54 Tdp2-203ENSMUST00000223804 1136 ntBASIC23.76■■□□□ 1.39
Cdca3Q99M54 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Cdca3Q99M54 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.72■■□□□ 1.39
Cdca3Q99M54 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
Cdca3Q99M54 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Cdca3Q99M54 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cdca3Q99M54 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cdca3Q99M54 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.69■■□□□ 1.38
Cdca3Q99M54 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Cdca3Q99M54 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Cdca3Q99M54 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cdca3Q99M54 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
Cdca3Q99M54 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Cdca3Q99M54 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Cdca3Q99M54 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC23.65■■□□□ 1.38
Cdca3Q99M54 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
Cdca3Q99M54 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Cdca3Q99M54 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Cdca3Q99M54 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC23.61■■□□□ 1.37
Cdca3Q99M54 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.61■■□□□ 1.37
Cdca3Q99M54 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.6■■□□□ 1.37
Cdca3Q99M54 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Cdca3Q99M54 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
Cdca3Q99M54 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cdca3Q99M54 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cdca3Q99M54 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Cdca3Q99M54 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Cdca3Q99M54 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.55■■□□□ 1.36
Cdca3Q99M54 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Cdca3Q99M54 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Cdca3Q99M54 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Cdca3Q99M54 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Cdca3Q99M54 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
Cdca3Q99M54 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cdca3Q99M54 Gm45855-201ENSMUST00000212546 880 ntBASIC23.5■■□□□ 1.35
Cdca3Q99M54 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Cdca3Q99M54 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.49■■□□□ 1.35
Cdca3Q99M54 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Cdca3Q99M54 Mipep-204ENSMUST00000225043 1548 ntBASIC23.49■■□□□ 1.35
Cdca3Q99M54 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Cdca3Q99M54 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Cdca3Q99M54 Peli2-204ENSMUST00000226513 1320 ntBASIC23.48■■□□□ 1.35
Cdca3Q99M54 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Cdca3Q99M54 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Cdca3Q99M54 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Cdca3Q99M54 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Cdca3Q99M54 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
Cdca3Q99M54 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Cdca3Q99M54 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.43■■□□□ 1.34
Cdca3Q99M54 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Cdca3Q99M54 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Cdca3Q99M54 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Cdca3Q99M54 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.42■■□□□ 1.34
Cdca3Q99M54 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Cdca3Q99M54 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Cdca3Q99M54 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cdca3Q99M54 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cdca3Q99M54 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Cdca3Q99M54 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Cdca3Q99M54 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cdca3Q99M54 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
Cdca3Q99M54 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cdca3Q99M54 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms