Protein–RNA interactions for Protein: Q8BQP8

Rab11fip4, Rab11 family-interacting protein 4, mousemouse

Predictions only

Length 635 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rab11fip4Q8BQP8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Rab11fip4Q8BQP8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Rab11fip4Q8BQP8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
Rab11fip4Q8BQP8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
Rab11fip4Q8BQP8 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC28.87■■■□□ 2.21
Rab11fip4Q8BQP8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Rab11fip4Q8BQP8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
Rab11fip4Q8BQP8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
Rab11fip4Q8BQP8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC28.84■■■□□ 2.21
Rab11fip4Q8BQP8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Rab11fip4Q8BQP8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rab11fip4Q8BQP8 Gm2415-204ENSMUST00000190235 2004 ntBASIC28.81■■■□□ 2.2
Rab11fip4Q8BQP8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC28.79■■■□□ 2.2
Rab11fip4Q8BQP8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
Rab11fip4Q8BQP8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
Rab11fip4Q8BQP8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC28.75■■■□□ 2.19
Rab11fip4Q8BQP8 Mipep-204ENSMUST00000225043 1548 ntBASIC28.74■■■□□ 2.19
Rab11fip4Q8BQP8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Rab11fip4Q8BQP8 Zfp131-205ENSMUST00000223812 663 ntBASIC28.7■■■□□ 2.18
Rab11fip4Q8BQP8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
Rab11fip4Q8BQP8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.64■■■□□ 2.18
Rab11fip4Q8BQP8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Rab11fip4Q8BQP8 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Rab11fip4Q8BQP8 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.58■■■□□ 2.17
Rab11fip4Q8BQP8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Rab11fip4Q8BQP8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Rab11fip4Q8BQP8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Rab11fip4Q8BQP8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.55■■■□□ 2.16
Rab11fip4Q8BQP8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Rab11fip4Q8BQP8 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Rab11fip4Q8BQP8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
Rab11fip4Q8BQP8 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Rab11fip4Q8BQP8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.52■■■□□ 2.16
Rab11fip4Q8BQP8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Rab11fip4Q8BQP8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC28.48■■■□□ 2.15
Rab11fip4Q8BQP8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Rab11fip4Q8BQP8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Rab11fip4Q8BQP8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
Rab11fip4Q8BQP8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Rab11fip4Q8BQP8 Gm16148-201ENSMUST00000119653 893 ntBASIC28.46■■■□□ 2.15
Rab11fip4Q8BQP8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
Rab11fip4Q8BQP8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Rab11fip4Q8BQP8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Rab11fip4Q8BQP8 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.41■■■□□ 2.14
Rab11fip4Q8BQP8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Rab11fip4Q8BQP8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Rab11fip4Q8BQP8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Rab11fip4Q8BQP8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Rab11fip4Q8BQP8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Rab11fip4Q8BQP8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Rab11fip4Q8BQP8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC28.36■■■□□ 2.13
Rab11fip4Q8BQP8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Rab11fip4Q8BQP8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Rab11fip4Q8BQP8 Peli2-204ENSMUST00000226513 1320 ntBASIC28.33■■■□□ 2.13
Rab11fip4Q8BQP8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
Rab11fip4Q8BQP8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Rab11fip4Q8BQP8 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
Rab11fip4Q8BQP8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
Rab11fip4Q8BQP8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Rab11fip4Q8BQP8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Rab11fip4Q8BQP8 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.26■■■□□ 2.11
Rab11fip4Q8BQP8 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
Rab11fip4Q8BQP8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Rab11fip4Q8BQP8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Rab11fip4Q8BQP8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
Rab11fip4Q8BQP8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Rab11fip4Q8BQP8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Rab11fip4Q8BQP8 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.23■■■□□ 2.11
Rab11fip4Q8BQP8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
Rab11fip4Q8BQP8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.22■■■□□ 2.11
Rab11fip4Q8BQP8 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Rab11fip4Q8BQP8 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Rab11fip4Q8BQP8 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rab11fip4Q8BQP8 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rab11fip4Q8BQP8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Rab11fip4Q8BQP8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
Rab11fip4Q8BQP8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Rab11fip4Q8BQP8 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Rab11fip4Q8BQP8 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Rab11fip4Q8BQP8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Rab11fip4Q8BQP8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Rab11fip4Q8BQP8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.13■■■□□ 2.09
Rab11fip4Q8BQP8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Rab11fip4Q8BQP8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
Rab11fip4Q8BQP8 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.09■■■□□ 2.09
Rab11fip4Q8BQP8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
Rab11fip4Q8BQP8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Rab11fip4Q8BQP8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Rab11fip4Q8BQP8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Rab11fip4Q8BQP8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC28.06■■■□□ 2.08
Rab11fip4Q8BQP8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC28.06■■■□□ 2.08
Rab11fip4Q8BQP8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC28.05■■■□□ 2.08
Rab11fip4Q8BQP8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Rab11fip4Q8BQP8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC28.05■■■□□ 2.08
Rab11fip4Q8BQP8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
Rab11fip4Q8BQP8 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC28.04■■■□□ 2.08
Rab11fip4Q8BQP8 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.04■■■□□ 2.08
Rab11fip4Q8BQP8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC28.03■■■□□ 2.08
Rab11fip4Q8BQP8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Rab11fip4Q8BQP8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms