Protein–RNA interactions for Protein: Q61418

Clcn4, H(+)/Cl(-) exchange transporter 4, mousemouse

Predictions only

Length 747 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn4Q61418 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Clcn4Q61418 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.76■■□□□ 1.39
Clcn4Q61418 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Clcn4Q61418 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
Clcn4Q61418 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Clcn4Q61418 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
Clcn4Q61418 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Clcn4Q61418 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Clcn4Q61418 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Clcn4Q61418 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Clcn4Q61418 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Clcn4Q61418 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC23.61■■□□□ 1.37
Clcn4Q61418 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
Clcn4Q61418 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Clcn4Q61418 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC23.6■■□□□ 1.37
Clcn4Q61418 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.59■■□□□ 1.37
Clcn4Q61418 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
Clcn4Q61418 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Clcn4Q61418 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
Clcn4Q61418 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
Clcn4Q61418 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Clcn4Q61418 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Clcn4Q61418 Gm24804-201ENSMUST00000174982 85 ntBASIC23.56■■□□□ 1.36
Clcn4Q61418 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Clcn4Q61418 Mipep-204ENSMUST00000225043 1548 ntBASIC23.54■■□□□ 1.36
Clcn4Q61418 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Clcn4Q61418 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.5■■□□□ 1.35
Clcn4Q61418 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC23.49■■□□□ 1.35
Clcn4Q61418 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Clcn4Q61418 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Clcn4Q61418 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Clcn4Q61418 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.45■■□□□ 1.34
Clcn4Q61418 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Clcn4Q61418 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Clcn4Q61418 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Clcn4Q61418 AC166822.3-201ENSMUST00000227394 661 ntBASIC23.42■■□□□ 1.34
Clcn4Q61418 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC23.41■■□□□ 1.34
Clcn4Q61418 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Clcn4Q61418 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Clcn4Q61418 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Clcn4Q61418 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Clcn4Q61418 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Clcn4Q61418 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
Clcn4Q61418 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.36■■□□□ 1.33
Clcn4Q61418 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Clcn4Q61418 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
Clcn4Q61418 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Clcn4Q61418 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Clcn4Q61418 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Clcn4Q61418 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Clcn4Q61418 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
Clcn4Q61418 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Clcn4Q61418 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
Clcn4Q61418 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Clcn4Q61418 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Clcn4Q61418 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
Clcn4Q61418 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Clcn4Q61418 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Clcn4Q61418 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
Clcn4Q61418 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Clcn4Q61418 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Clcn4Q61418 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Clcn4Q61418 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Clcn4Q61418 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Clcn4Q61418 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Clcn4Q61418 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Clcn4Q61418 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Clcn4Q61418 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Clcn4Q61418 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Clcn4Q61418 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Clcn4Q61418 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Clcn4Q61418 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Clcn4Q61418 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Clcn4Q61418 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Clcn4Q61418 Gm9905-201ENSMUST00000065740 1845 ntBASIC23.15■■□□□ 1.3
Clcn4Q61418 Zxda-201ENSMUST00000117281 2621 ntBASIC23.15■■□□□ 1.3
Clcn4Q61418 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Clcn4Q61418 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Clcn4Q61418 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Clcn4Q61418 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Clcn4Q61418 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Clcn4Q61418 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Clcn4Q61418 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Clcn4Q61418 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
Clcn4Q61418 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Clcn4Q61418 Gm6206-201ENSMUST00000133472 2199 ntBASIC23.07■■□□□ 1.28
Clcn4Q61418 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Clcn4Q61418 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC23.07■■□□□ 1.28
Clcn4Q61418 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC23.06■■□□□ 1.28
Clcn4Q61418 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC23.06■■□□□ 1.28
Clcn4Q61418 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Clcn4Q61418 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Clcn4Q61418 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Clcn4Q61418 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Clcn4Q61418 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
Clcn4Q61418 Zfp131-205ENSMUST00000223812 663 ntBASIC23.04■■□□□ 1.28
Clcn4Q61418 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Clcn4Q61418 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Clcn4Q61418 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Clcn4Q61418 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms