Protein–RNA interactions for Protein: Q61009

Scarb1, Scavenger receptor class B member 1, mousemouse

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scarb1Q61009 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.69■■□□□ 1.06
Scarb1Q61009 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scarb1Q61009 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.66■■□□□ 1.06
Scarb1Q61009 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scarb1Q61009 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Scarb1Q61009 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.65■■□□□ 1.06
Scarb1Q61009 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Scarb1Q61009 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC21.64■■□□□ 1.05
Scarb1Q61009 Rab21-202ENSMUST00000218831 843 ntBASIC21.64■■□□□ 1.05
Scarb1Q61009 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Scarb1Q61009 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Scarb1Q61009 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC21.63■■□□□ 1.05
Scarb1Q61009 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scarb1Q61009 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Scarb1Q61009 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC21.59■■□□□ 1.05
Scarb1Q61009 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.59■■□□□ 1.05
Scarb1Q61009 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Scarb1Q61009 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Scarb1Q61009 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Scarb1Q61009 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Scarb1Q61009 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Scarb1Q61009 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Scarb1Q61009 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Scarb1Q61009 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Scarb1Q61009 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scarb1Q61009 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Scarb1Q61009 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC21.52■■□□□ 1.04
Scarb1Q61009 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Scarb1Q61009 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Scarb1Q61009 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scarb1Q61009 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scarb1Q61009 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Scarb1Q61009 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Scarb1Q61009 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Scarb1Q61009 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Scarb1Q61009 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Scarb1Q61009 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC21.46■■□□□ 1.03
Scarb1Q61009 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Scarb1Q61009 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scarb1Q61009 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC21.43■■□□□ 1.02
Scarb1Q61009 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Scarb1Q61009 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Scarb1Q61009 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scarb1Q61009 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Scarb1Q61009 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Scarb1Q61009 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scarb1Q61009 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Scarb1Q61009 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Scarb1Q61009 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Scarb1Q61009 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Scarb1Q61009 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scarb1Q61009 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Scarb1Q61009 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Scarb1Q61009 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Scarb1Q61009 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Scarb1Q61009 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Scarb1Q61009 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
Scarb1Q61009 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Scarb1Q61009 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Scarb1Q61009 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Scarb1Q61009 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Scarb1Q61009 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Scarb1Q61009 Mipep-204ENSMUST00000225043 1548 ntBASIC21.3■■□□□ 1
Scarb1Q61009 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC21.3■■□□□ 1
Scarb1Q61009 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Scarb1Q61009 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Scarb1Q61009 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.29■■□□□ 1
Scarb1Q61009 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.29■■□□□ 1
Scarb1Q61009 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scarb1Q61009 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Scarb1Q61009 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Scarb1Q61009 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Scarb1Q61009 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Scarb1Q61009 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scarb1Q61009 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Scarb1Q61009 AL845457.1-201ENSMUST00000197244 68 ntBASIC21.25■□□□□ 0.99
Scarb1Q61009 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Scarb1Q61009 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scarb1Q61009 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Scarb1Q61009 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scarb1Q61009 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scarb1Q61009 Gm43445-201ENSMUST00000198564 2091 ntBASIC21.23■□□□□ 0.99
Scarb1Q61009 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Scarb1Q61009 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Scarb1Q61009 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Scarb1Q61009 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Scarb1Q61009 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Scarb1Q61009 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Scarb1Q61009 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scarb1Q61009 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Scarb1Q61009 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Scarb1Q61009 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Scarb1Q61009 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Scarb1Q61009 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Scarb1Q61009 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Scarb1Q61009 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.15■□□□□ 0.98
Scarb1Q61009 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Scarb1Q61009 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scarb1Q61009 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Scarb1Q61009 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 12.4 ms