Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.97■□□□□ 0.95
Trav8d-1Q5R1H8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav8d-1Q5R1H8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav8d-1Q5R1H8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav8d-1Q5R1H8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav8d-1Q5R1H8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav8d-1Q5R1H8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav8d-1Q5R1H8 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav8d-1Q5R1H8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.92■□□□□ 0.94
Trav8d-1Q5R1H8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Trav8d-1Q5R1H8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav8d-1Q5R1H8 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav8d-1Q5R1H8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav8d-1Q5R1H8 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav8d-1Q5R1H8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trav8d-1Q5R1H8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.89■□□□□ 0.93
Trav8d-1Q5R1H8 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav8d-1Q5R1H8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trav8d-1Q5R1H8 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav8d-1Q5R1H8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav8d-1Q5R1H8 Zfp131-207ENSMUST00000224946 1783 ntBASIC20.87■□□□□ 0.93
Trav8d-1Q5R1H8 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav8d-1Q5R1H8 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav8d-1Q5R1H8 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav8d-1Q5R1H8 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trav8d-1Q5R1H8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trav8d-1Q5R1H8 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trav8d-1Q5R1H8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trav8d-1Q5R1H8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav8d-1Q5R1H8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.82■□□□□ 0.92
Trav8d-1Q5R1H8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav8d-1Q5R1H8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.82■□□□□ 0.92
Trav8d-1Q5R1H8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav8d-1Q5R1H8 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav8d-1Q5R1H8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Trav8d-1Q5R1H8 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Trav8d-1Q5R1H8 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Trav8d-1Q5R1H8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC20.76■□□□□ 0.91
Trav8d-1Q5R1H8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trav8d-1Q5R1H8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trav8d-1Q5R1H8 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
Trav8d-1Q5R1H8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trav8d-1Q5R1H8 Gm26115-201ENSMUST00000175605 87 ntBASIC20.74■□□□□ 0.91
Trav8d-1Q5R1H8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trav8d-1Q5R1H8 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.73■□□□□ 0.91
Trav8d-1Q5R1H8 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trav8d-1Q5R1H8 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trav8d-1Q5R1H8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav8d-1Q5R1H8 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav8d-1Q5R1H8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trav8d-1Q5R1H8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trav8d-1Q5R1H8 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trav8d-1Q5R1H8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trav8d-1Q5R1H8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trav8d-1Q5R1H8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav8d-1Q5R1H8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trav8d-1Q5R1H8 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.63■□□□□ 0.89
Trav8d-1Q5R1H8 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav8d-1Q5R1H8 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav8d-1Q5R1H8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trav8d-1Q5R1H8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trav8d-1Q5R1H8 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav8d-1Q5R1H8 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trav8d-1Q5R1H8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Trav8d-1Q5R1H8 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trav8d-1Q5R1H8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trav8d-1Q5R1H8 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trav8d-1Q5R1H8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trav8d-1Q5R1H8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Trav8d-1Q5R1H8 Gm8109-201ENSMUST00000194076 746 ntBASIC20.57■□□□□ 0.88
Trav8d-1Q5R1H8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.56■□□□□ 0.88
Trav8d-1Q5R1H8 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.56■□□□□ 0.88
Trav8d-1Q5R1H8 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Trav8d-1Q5R1H8 Amer2-203ENSMUST00000225247 2662 ntBASIC20.55■□□□□ 0.88
Trav8d-1Q5R1H8 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Trav8d-1Q5R1H8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Trav8d-1Q5R1H8 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Trav8d-1Q5R1H8 Gm27322-201ENSMUST00000184007 104 ntBASIC20.53■□□□□ 0.88
Trav8d-1Q5R1H8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Trav8d-1Q5R1H8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Trav8d-1Q5R1H8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav8d-1Q5R1H8 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Trav8d-1Q5R1H8 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trav8d-1Q5R1H8 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Trav8d-1Q5R1H8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav8d-1Q5R1H8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav8d-1Q5R1H8 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Trav8d-1Q5R1H8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
Trav8d-1Q5R1H8 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav8d-1Q5R1H8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Trav8d-1Q5R1H8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav8d-1Q5R1H8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav8d-1Q5R1H8 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Trav8d-1Q5R1H8 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.44■□□□□ 0.86
Trav8d-1Q5R1H8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms