Protein–RNA interactions for Protein: P70271

Pdlim4, PDZ and LIM domain protein 4, mousemouse

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim4P70271 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.52■■□□□ 1.04
Pdlim4P70271 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pdlim4P70271 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pdlim4P70271 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pdlim4P70271 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim4P70271 Gm24804-201ENSMUST00000174982 85 ntBASIC21.49■■□□□ 1.03
Pdlim4P70271 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim4P70271 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim4P70271 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim4P70271 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
Pdlim4P70271 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Pdlim4P70271 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pdlim4P70271 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pdlim4P70271 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.45■■□□□ 1.02
Pdlim4P70271 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Pdlim4P70271 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pdlim4P70271 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Pdlim4P70271 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pdlim4P70271 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pdlim4P70271 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Pdlim4P70271 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim4P70271 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim4P70271 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim4P70271 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim4P70271 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim4P70271 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Pdlim4P70271 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.34■■□□□ 1.01
Pdlim4P70271 Gm2415-204ENSMUST00000190235 2004 ntBASIC21.33■■□□□ 1
Pdlim4P70271 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pdlim4P70271 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Pdlim4P70271 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pdlim4P70271 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pdlim4P70271 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.3■■□□□ 1
Pdlim4P70271 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pdlim4P70271 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC21.29■■□□□ 1
Pdlim4P70271 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC21.29■■□□□ 1
Pdlim4P70271 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.29■■□□□ 1
Pdlim4P70271 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Pdlim4P70271 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pdlim4P70271 Peli2-204ENSMUST00000226513 1320 ntBASIC21.28■■□□□ 1
Pdlim4P70271 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Pdlim4P70271 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.27■■□□□ 1
Pdlim4P70271 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Pdlim4P70271 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pdlim4P70271 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pdlim4P70271 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pdlim4P70271 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Pdlim4P70271 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pdlim4P70271 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pdlim4P70271 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Pdlim4P70271 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pdlim4P70271 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pdlim4P70271 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
Pdlim4P70271 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pdlim4P70271 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC21.2■□□□□ 0.98
Pdlim4P70271 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Pdlim4P70271 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Pdlim4P70271 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pdlim4P70271 Gm6658-202ENSMUST00000209493 1885 ntBASIC21.19■□□□□ 0.98
Pdlim4P70271 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.18■□□□□ 0.98
Pdlim4P70271 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Pdlim4P70271 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Pdlim4P70271 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pdlim4P70271 Gm16148-201ENSMUST00000119653 893 ntBASIC21.13■□□□□ 0.97
Pdlim4P70271 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Pdlim4P70271 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pdlim4P70271 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.09■□□□□ 0.97
Pdlim4P70271 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pdlim4P70271 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pdlim4P70271 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pdlim4P70271 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pdlim4P70271 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pdlim4P70271 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Pdlim4P70271 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Pdlim4P70271 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Pdlim4P70271 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Pdlim4P70271 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Pdlim4P70271 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Pdlim4P70271 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pdlim4P70271 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pdlim4P70271 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC20.98■□□□□ 0.95
Pdlim4P70271 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Pdlim4P70271 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Pdlim4P70271 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.96■□□□□ 0.95
Pdlim4P70271 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Pdlim4P70271 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pdlim4P70271 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Pdlim4P70271 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Pdlim4P70271 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Pdlim4P70271 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Pdlim4P70271 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Pdlim4P70271 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Pdlim4P70271 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Pdlim4P70271 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.91■□□□□ 0.94
Pdlim4P70271 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
Pdlim4P70271 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pdlim4P70271 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pdlim4P70271 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Pdlim4P70271 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Pdlim4P70271 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms