Protein–RNA interactions for Protein: P56873

Sssca1, Sjoegren syndrome/scleroderma autoantigen 1 homolog, mousemouse

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sssca1P56873 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sssca1P56873 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Sssca1P56873 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Sssca1P56873 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Sssca1P56873 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Sssca1P56873 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sssca1P56873 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Sssca1P56873 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Sssca1P56873 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.81■□□□□ 0.92
Sssca1P56873 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Sssca1P56873 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sssca1P56873 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Sssca1P56873 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Sssca1P56873 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Sssca1P56873 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Sssca1P56873 Mipep-204ENSMUST00000225043 1548 ntBASIC20.77■□□□□ 0.92
Sssca1P56873 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Sssca1P56873 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sssca1P56873 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sssca1P56873 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.75■□□□□ 0.91
Sssca1P56873 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Sssca1P56873 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Sssca1P56873 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sssca1P56873 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sssca1P56873 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Sssca1P56873 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Sssca1P56873 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sssca1P56873 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC20.69■□□□□ 0.9
Sssca1P56873 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.69■□□□□ 0.9
Sssca1P56873 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sssca1P56873 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sssca1P56873 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sssca1P56873 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sssca1P56873 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sssca1P56873 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sssca1P56873 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.64■□□□□ 0.89
Sssca1P56873 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sssca1P56873 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sssca1P56873 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sssca1P56873 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sssca1P56873 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.6■□□□□ 0.89
Sssca1P56873 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sssca1P56873 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Sssca1P56873 Zxda-201ENSMUST00000117281 2621 ntBASIC20.57■□□□□ 0.88
Sssca1P56873 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Sssca1P56873 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Sssca1P56873 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sssca1P56873 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.56■□□□□ 0.88
Sssca1P56873 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sssca1P56873 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Sssca1P56873 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Sssca1P56873 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.55■□□□□ 0.88
Sssca1P56873 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Sssca1P56873 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Sssca1P56873 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Sssca1P56873 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Sssca1P56873 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Sssca1P56873 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Sssca1P56873 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Sssca1P56873 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
Sssca1P56873 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Sssca1P56873 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Sssca1P56873 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sssca1P56873 Gm25262-201ENSMUST00000174934 133 ntBASIC20.43■□□□□ 0.86
Sssca1P56873 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sssca1P56873 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Sssca1P56873 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Sssca1P56873 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
Sssca1P56873 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Sssca1P56873 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.41■□□□□ 0.86
Sssca1P56873 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
Sssca1P56873 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Sssca1P56873 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Sssca1P56873 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Sssca1P56873 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Sssca1P56873 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC20.36■□□□□ 0.85
Sssca1P56873 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sssca1P56873 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sssca1P56873 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Sssca1P56873 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sssca1P56873 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Sssca1P56873 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Sssca1P56873 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sssca1P56873 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Sssca1P56873 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Sssca1P56873 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sssca1P56873 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sssca1P56873 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sssca1P56873 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sssca1P56873 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sssca1P56873 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Sssca1P56873 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sssca1P56873 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
Sssca1P56873 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC20.27■□□□□ 0.84
Sssca1P56873 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.27■□□□□ 0.84
Sssca1P56873 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Sssca1P56873 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sssca1P56873 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Sssca1P56873 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.24■□□□□ 0.83
Sssca1P56873 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 181.8 ms