Protein–RNA interactions for Protein: A0A140T8P8

Trbv17, T cell receptor beta, variable 17 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv17A0A140T8P8 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trbv17A0A140T8P8 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trbv17A0A140T8P8 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trbv17A0A140T8P8 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trbv17A0A140T8P8 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Trbv17A0A140T8P8 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.74■□□□□ 0.75
Trbv17A0A140T8P8 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Trbv17A0A140T8P8 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Trbv17A0A140T8P8 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC19.72■□□□□ 0.75
Trbv17A0A140T8P8 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Trbv17A0A140T8P8 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.7■□□□□ 0.74
Trbv17A0A140T8P8 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.7■□□□□ 0.74
Trbv17A0A140T8P8 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trbv17A0A140T8P8 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trbv17A0A140T8P8 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Trbv17A0A140T8P8 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trbv17A0A140T8P8 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trbv17A0A140T8P8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Trbv17A0A140T8P8 Gm2415-204ENSMUST00000190235 2004 ntBASIC19.64■□□□□ 0.73
Trbv17A0A140T8P8 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Trbv17A0A140T8P8 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trbv17A0A140T8P8 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Trbv17A0A140T8P8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv17A0A140T8P8 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv17A0A140T8P8 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Trbv17A0A140T8P8 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv17A0A140T8P8 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Trbv17A0A140T8P8 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv17A0A140T8P8 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv17A0A140T8P8 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trbv17A0A140T8P8 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv17A0A140T8P8 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv17A0A140T8P8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trbv17A0A140T8P8 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trbv17A0A140T8P8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv17A0A140T8P8 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.53■□□□□ 0.72
Trbv17A0A140T8P8 Gm6658-202ENSMUST00000209493 1885 ntBASIC19.53■□□□□ 0.72
Trbv17A0A140T8P8 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trbv17A0A140T8P8 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv17A0A140T8P8 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv17A0A140T8P8 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv17A0A140T8P8 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv17A0A140T8P8 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv17A0A140T8P8 Gm24804-201ENSMUST00000174982 85 ntBASIC19.44■□□□□ 0.7
Trbv17A0A140T8P8 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trbv17A0A140T8P8 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trbv17A0A140T8P8 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv17A0A140T8P8 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv17A0A140T8P8 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv17A0A140T8P8 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
Trbv17A0A140T8P8 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trbv17A0A140T8P8 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv17A0A140T8P8 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv17A0A140T8P8 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv17A0A140T8P8 Peli2-204ENSMUST00000226513 1320 ntBASIC19.37■□□□□ 0.69
Trbv17A0A140T8P8 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv17A0A140T8P8 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv17A0A140T8P8 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv17A0A140T8P8 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.35■□□□□ 0.69
Trbv17A0A140T8P8 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv17A0A140T8P8 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv17A0A140T8P8 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv17A0A140T8P8 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trbv17A0A140T8P8 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.33■□□□□ 0.69
Trbv17A0A140T8P8 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC19.33■□□□□ 0.68
Trbv17A0A140T8P8 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv17A0A140T8P8 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv17A0A140T8P8 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv17A0A140T8P8 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trbv17A0A140T8P8 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Trbv17A0A140T8P8 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv17A0A140T8P8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv17A0A140T8P8 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv17A0A140T8P8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trbv17A0A140T8P8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv17A0A140T8P8 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv17A0A140T8P8 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trbv17A0A140T8P8 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trbv17A0A140T8P8 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv17A0A140T8P8 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Trbv17A0A140T8P8 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv17A0A140T8P8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.24■□□□□ 0.67
Trbv17A0A140T8P8 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trbv17A0A140T8P8 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trbv17A0A140T8P8 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Trbv17A0A140T8P8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trbv17A0A140T8P8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv17A0A140T8P8 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv17A0A140T8P8 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv17A0A140T8P8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.2■□□□□ 0.66
Trbv17A0A140T8P8 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv17A0A140T8P8 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv17A0A140T8P8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trbv17A0A140T8P8 Gm16148-201ENSMUST00000119653 893 ntBASIC19.19■□□□□ 0.66
Trbv17A0A140T8P8 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Trbv17A0A140T8P8 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trbv17A0A140T8P8 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.18■□□□□ 0.66
Trbv17A0A140T8P8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trbv17A0A140T8P8 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC19.17■□□□□ 0.66
Trbv17A0A140T8P8 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms