Protein–RNA interactions for Protein: A0A075B656

Trav18, T cell receptor alpha variable 18 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav18A0A075B656 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Trav18A0A075B656 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav18A0A075B656 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Trav18A0A075B656 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav18A0A075B656 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav18A0A075B656 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav18A0A075B656 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trav18A0A075B656 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav18A0A075B656 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav18A0A075B656 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trav18A0A075B656 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21.24■□□□□ 0.99
Trav18A0A075B656 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.23■□□□□ 0.99
Trav18A0A075B656 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav18A0A075B656 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trav18A0A075B656 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trav18A0A075B656 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Trav18A0A075B656 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav18A0A075B656 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
Trav18A0A075B656 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav18A0A075B656 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav18A0A075B656 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trav18A0A075B656 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav18A0A075B656 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav18A0A075B656 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trav18A0A075B656 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav18A0A075B656 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC21.12■□□□□ 0.97
Trav18A0A075B656 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trav18A0A075B656 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav18A0A075B656 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav18A0A075B656 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav18A0A075B656 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.05■□□□□ 0.96
Trav18A0A075B656 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav18A0A075B656 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trav18A0A075B656 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trav18A0A075B656 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC21.03■□□□□ 0.96
Trav18A0A075B656 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav18A0A075B656 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav18A0A075B656 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trav18A0A075B656 Gm17082-201ENSMUST00000166043 1091 ntBASIC21.01■□□□□ 0.95
Trav18A0A075B656 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trav18A0A075B656 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trav18A0A075B656 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trav18A0A075B656 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Trav18A0A075B656 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav18A0A075B656 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC21■□□□□ 0.95
Trav18A0A075B656 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav18A0A075B656 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav18A0A075B656 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trav18A0A075B656 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav18A0A075B656 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Trav18A0A075B656 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav18A0A075B656 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav18A0A075B656 AC166822.3-201ENSMUST00000227394 661 ntBASIC20.96■□□□□ 0.95
Trav18A0A075B656 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Trav18A0A075B656 Gm27322-201ENSMUST00000184007 104 ntBASIC20.95■□□□□ 0.94
Trav18A0A075B656 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav18A0A075B656 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
Trav18A0A075B656 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav18A0A075B656 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav18A0A075B656 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.91■□□□□ 0.94
Trav18A0A075B656 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.9■□□□□ 0.94
Trav18A0A075B656 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav18A0A075B656 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav18A0A075B656 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav18A0A075B656 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav18A0A075B656 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav18A0A075B656 Gm6206-201ENSMUST00000133472 2199 ntBASIC20.88■□□□□ 0.93
Trav18A0A075B656 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.88■□□□□ 0.93
Trav18A0A075B656 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav18A0A075B656 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Trav18A0A075B656 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trav18A0A075B656 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav18A0A075B656 Zxda-201ENSMUST00000117281 2621 ntBASIC20.86■□□□□ 0.93
Trav18A0A075B656 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.85■□□□□ 0.93
Trav18A0A075B656 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav18A0A075B656 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav18A0A075B656 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trav18A0A075B656 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav18A0A075B656 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trav18A0A075B656 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trav18A0A075B656 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trav18A0A075B656 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Trav18A0A075B656 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Trav18A0A075B656 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trav18A0A075B656 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.74■□□□□ 0.91
Trav18A0A075B656 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trav18A0A075B656 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trav18A0A075B656 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trav18A0A075B656 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trav18A0A075B656 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Trav18A0A075B656 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trav18A0A075B656 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav18A0A075B656 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trav18A0A075B656 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trav18A0A075B656 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trav18A0A075B656 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav18A0A075B656 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trav18A0A075B656 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trav18A0A075B656 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trav18A0A075B656 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms