Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AGAP12P-201ENST00000585227 2359 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC034205.3-201ENST00000603595 1376 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 RNF7-202ENST00000393000 805 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC152010.1-201ENST00000415779 2006 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC067942.1-202ENST00000471756 1057 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC133555.4-201ENST00000569081 152 ntBASIC11.14□□□□□ -0.63
VPS13CQ709C8 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC11.14□□□□□ -0.63
VPS13CQ709C8 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
VPS13CQ709C8 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 DDC-212ENST00000615193 1674 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ANXA13-201ENST00000262219 1588 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 UCKL1-AS1-201ENST00000623569 3602 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 FAM213AP2-201ENST00000521579 683 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 AL354704.1-201ENST00000629369 1966 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 NLK-203ENST00000582037 1503 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 PAXIP1-AS2-203ENST00000449486 2121 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AC007191.1-201ENST00000623179 2995 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
VPS13CQ709C8 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 RN7SKP255-201ENST00000363442 313 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 RN7SKP203-201ENST00000363618 332 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 RN7SKP71-201ENST00000364558 318 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 7SK.1-201ENST00000365328 331 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 NOS2P3-201ENST00000411468 867 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 NOS2P2-201ENST00000426269 867 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC11.13□□□□□ -0.63
VPS13CQ709C8 AP003170.2-201ENST00000544730 786 ntBASIC11.13□□□□□ -0.63
VPS13CQ709C8 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms