Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 API5-208ENST00000531273 1868 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 AC006372.4-201ENST00000624122 1543 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
H3F3AP84243 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 NME4-203ENST00000397722 1232 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 AC145285.5-201ENST00000562217 361 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.49□□□□□ -0.41
H3F3AP84243 AL133499.1-201ENST00000596207 608 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 SIGLEC22P-201ENST00000599104 714 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.49□□□□□ -0.41
H3F3AP84243 AC051619.9-201ENST00000623237 597 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 AL356585.2-201ENST00000625078 2396 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.49□□□□□ -0.41
H3F3AP84243 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
H3F3AP84243 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
H3F3AP84243 AC020917.4-201ENST00000623994 1999 ntBASIC12.49□□□□□ -0.41
H3F3AP84243 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.49□□□□□ -0.41
H3F3AP84243 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC12.48□□□□□ -0.41
H3F3AP84243 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
H3F3AP84243 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 KRT8P19-201ENST00000551916 1455 ntBASIC12.48□□□□□ -0.41
H3F3AP84243 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
H3F3AP84243 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms