Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CDH3P22223 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.81□□□□□ -0.2
CDH3P22223 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 AC090505.1-201ENST00000430515 1834 ntBASIC13.81□□□□□ -0.2
CDH3P22223 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.81□□□□□ -0.2
CDH3P22223 RPL8P2-201ENST00000430538 502 ntBASIC13.81□□□□□ -0.2
CDH3P22223 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC13.81□□□□□ -0.2
CDH3P22223 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 EEF1DP6-201ENST00000449232 372 ntBASIC13.81□□□□□ -0.2
CDH3P22223 RN7SL67P-201ENST00000492147 296 ntBASIC13.81□□□□□ -0.2
CDH3P22223 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.81□□□□□ -0.2
CDH3P22223 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.81□□□□□ -0.2
CDH3P22223 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 PHBP15-201ENST00000574228 665 ntBASIC13.81□□□□□ -0.2
CDH3P22223 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC13.81□□□□□ -0.2
CDH3P22223 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
CDH3P22223 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.81□□□□□ -0.2
CDH3P22223 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.81□□□□□ -0.2
CDH3P22223 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CDH3P22223 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
CDH3P22223 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 OR2K2-202ENST00000374428 1038 ntBASIC13.8□□□□□ -0.2
CDH3P22223 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.8□□□□□ -0.2
CDH3P22223 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 BANF1P3-201ENST00000412556 261 ntBASIC13.8□□□□□ -0.2
CDH3P22223 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 RPS9P1-201ENST00000419943 583 ntBASIC13.8□□□□□ -0.2
CDH3P22223 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.8□□□□□ -0.2
CDH3P22223 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.8□□□□□ -0.2
CDH3P22223 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.8□□□□□ -0.2
CDH3P22223 MAGEA5-201ENST00000446757 942 ntBASIC13.8□□□□□ -0.2
CDH3P22223 CEP164P1-201ENST00000455142 418 ntBASIC13.8□□□□□ -0.2
CDH3P22223 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.8□□□□□ -0.2
CDH3P22223 AC093752.3-201ENST00000567343 901 ntBASIC13.8□□□□□ -0.2
CDH3P22223 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.8□□□□□ -0.2
CDH3P22223 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.8□□□□□ -0.2
CDH3P22223 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CDH3P22223 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CDH3P22223 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms