Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC064801.2-201ENST00000625052 1303 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 PCSK7-215ENST00000540028 3332 ntTSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 CEACAM20-201ENST00000611497 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 IRS4-201ENST00000372129 3928 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
CXCL1P09341 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 AC011481.3-201ENST00000623895 5594 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 SLC6A7-201ENST00000230671 3739 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 SPART-203ENST00000451493 4944 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 C10orf76-202ENST00000370033 4119 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC10.88□□□□□ -0.67
CXCL1P09341 AC254562.1-201ENST00000417586 456 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC10.88□□□□□ -0.67
CXCL1P09341 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 AC114812.1-204ENST00000449669 728 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC10.88□□□□□ -0.67
CXCL1P09341 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC10.88□□□□□ -0.67
CXCL1P09341 GIMAP3P-201ENST00000495150 836 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 KIF28P-202ENST00000504864 3064 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 POLD2P1-201ENST00000511220 997 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC10.88□□□□□ -0.67
CXCL1P09341 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC10.88□□□□□ -0.67
CXCL1P09341 AC103988.2-201ENST00000561804 725 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 RARRES2P5-201ENST00000564013 466 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 MIR3687-2-201ENST00000577708 61 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 AC015911.4-201ENST00000588022 1070 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 MIR3687-1-201ENST00000614492 61 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 AC007431.3-201ENST00000623221 587 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 FP325332.1-201ENST00000624818 2045 ntBASIC10.88□□□□□ -0.67
CXCL1P09341 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 RASAL1-203ENST00000446861 3040 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 GUCY1A3-205ENST00000506455 2715 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 AC008758.4-201ENST00000435033 2593 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 SPATA2-201ENST00000289431 4022 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 MATN2-218ENST00000524308 3449 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 OPRK1-201ENST00000265572 5014 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 SLC44A4-203ENST00000375562 2505 ntTSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
CXCL1P09341 ZSCAN20-202ENST00000373413 2367 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 RGS9-203ENST00000449996 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 RAB10-201ENST00000264710 3535 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 ZNF529-209ENST00000591340 4331 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 REPS1-205ENST00000415951 2424 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 TMEM200A-201ENST00000296978 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 GOLGA8O-201ENST00000509311 1997 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 AIF1L-206ENST00000372302 3340 ntTSL 2 BASIC10.87□□□□□ -0.67
CXCL1P09341 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC10.87□□□□□ -0.67
CXCL1P09341 SP7-202ENST00000536324 3151 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
CXCL1P09341 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC10.87□□□□□ -0.67
CXCL1P09341 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 BRF1-202ENST00000379932 884 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
CXCL1P09341 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC10.87□□□□□ -0.67
CXCL1P09341 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC10.87□□□□□ -0.67
CXCL1P09341 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC10.87□□□□□ -0.67
CXCL1P09341 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC10.87□□□□□ -0.67
CXCL1P09341 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms