Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 AC005011.1-201ENST00000455206 210 ntBASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 CPA5-203ENST00000461828 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 RN7SL677P-201ENST00000466970 319 ntBASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 ZNF726-204ENST00000531821 1798 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 MYL6-210ENST00000548400 573 ntTSL 3 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 RPS9-213ENST00000626547 476 ntTSL 2 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 GMEB1-201ENST00000294409 1912 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHANK3Q9BYB0 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 AHCYP7-201ENST00000560847 1308 ntBASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 HNRNPA1P59-201ENST00000430583 918 ntBASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 AC090950.1-202ENST00000605733 644 ntBASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC17.33■□□□□ 0.37
SHANK3Q9BYB0 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 POM121L4P-202ENST00000427789 1891 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 MIR181D-201ENST00000384853 137 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 GSG1L2-201ENST00000399363 882 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 LINC00299-203ENST00000444688 537 ntTSL 4 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC234582.2-201ENST00000455788 568 ntTSL 3 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC105424.1-201ENST00000514583 209 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 SLC25A51P3-201ENST00000521814 889 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC012146.4-201ENST00000575546 271 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 HNRNPA1P11-201ENST00000580106 956 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 CR392039.2-201ENST00000623182 509 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 LINC00638-201ENST00000555578 2518 ntBASIC17.33■□□□□ 0.36
SHANK3Q9BYB0 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 ZNF493-208ENST00000599461 1769 ntBASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 BTN2A2-204ENST00000432533 1570 ntTSL 2 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 KRT18P40-201ENST00000599859 1571 ntBASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC020914.1-201ENST00000396477 1476 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC025219.1-201ENST00000559299 526 ntTSL 4 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 Metazoa_SRP.47-201ENST00000616942 279 ntBASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC117500.5-201ENST00000623233 527 ntBASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 AC016526.4-201ENST00000636059 517 ntTSL 3 BASIC17.32■□□□□ 0.36
SHANK3Q9BYB0 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms