Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PREX1-201ENST00000371941 6636 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 MSTO2P-201ENST00000314835 1709 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AL161932.2-201ENST00000435436 679 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 RNA5SP412-201ENST00000516234 123 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AC026616.1-201ENST00000523157 525 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AC010328.2-201ENST00000597698 1111 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AC104506.1-201ENST00000609247 429 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 REXO1L1P-201ENST00000379010 6598 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 OR2I1P-208ENST00000641137 4948 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 ALG3P1-201ENST00000508806 1114 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 RNA5SP486-201ENST00000515961 83 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 KRT90P-201ENST00000549264 1064 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 KRT8P2-201ENST00000556193 944 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 RN7SL219P-201ENST00000582872 296 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AC138696.2-201ENST00000607376 223 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AL928654.5-201ENST00000624831 2501 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 AC093915.1-201ENST00000605740 1543 ntBASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
DEPDC4Q8N2C3 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms