Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FTX-216ENST00000638985 1367 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AL928921.2-201ENST00000641325 2442 ntBASIC13.56□□□□□ -0.24
COL28A1Q2UY09 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 JPT2-203ENST00000382711 894 ntTSL 4 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 CSNK1G2P1-201ENST00000442675 955 ntBASIC13.56□□□□□ -0.24
COL28A1Q2UY09 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 OR5BD1P-201ENST00000532527 817 ntBASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MIR2392-201ENST00000584881 84 ntBASIC13.56□□□□□ -0.24
COL28A1Q2UY09 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL28A1Q2UY09 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AC025183.3-201ENST00000623526 1482 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AC099521.3-201ENST00000624251 2938 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AC113367.3-201ENST00000508316 1912 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AL354702.1-201ENST00000442006 1960 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 ALG1L3P-201ENST00000503331 765 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AC093826.1-201ENST00000508655 993 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 RNA5SP406-201ENST00000516106 112 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 AL109809.1-201ENST00000418979 1367 ntBASIC13.55□□□□□ -0.24
COL28A1Q2UY09 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.55□□□□□ -0.24
COL28A1Q2UY09 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms