Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA1P55317 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC104073.2-201ENST00000453737 312 ntBASIC13.6□□□□□ -0.23
FOXA1P55317 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.6□□□□□ -0.23
FOXA1P55317 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC090164.2-201ENST00000611487 516 ntBASIC13.6□□□□□ -0.23
FOXA1P55317 AL023803.2-201ENST00000620080 638 ntBASIC13.6□□□□□ -0.23
FOXA1P55317 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 AC024075.2-201ENST00000598112 1473 ntBASIC13.6□□□□□ -0.23
FOXA1P55317 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
FOXA1P55317 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
FOXA1P55317 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
FOXA1P55317 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.6□□□□□ -0.23
FOXA1P55317 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13.59□□□□□ -0.23
FOXA1P55317 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 POM121L14P-201ENST00000406100 1558 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC13.59□□□□□ -0.23
FOXA1P55317 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.59□□□□□ -0.23
FOXA1P55317 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 GOLGA2P4-201ENST00000441462 777 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 CHCHD2P2-201ENST00000503744 321 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.59□□□□□ -0.23
FOXA1P55317 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 AC093752.3-201ENST00000567343 901 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 RN7SL455P-201ENST00000580629 282 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 AL157813.1-201ENST00000612996 587 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 AC004923.1-202ENST00000642106 209 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 AC067931.2-201ENST00000623655 2003 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 DLX4-206ENST00000611342 1662 ntBASIC13.59□□□□□ -0.23
FOXA1P55317 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
FOXA1P55317 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
FOXA1P55317 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.59□□□□□ -0.23
FOXA1P55317 AL358781.1-202ENST00000321081 1360 ntBASIC13.58□□□□□ -0.23
FOXA1P55317 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.58□□□□□ -0.23
FOXA1P55317 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA1P55317 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.58□□□□□ -0.23
FOXA1P55317 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA1P55317 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
FOXA1P55317 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
FOXA1P55317 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
FOXA1P55317 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 AC010970.1-201ENST00000445125 1848 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
FOXA1P55317 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.58□□□□□ -0.24
FOXA1P55317 RPS9P1-201ENST00000419943 583 ntBASIC13.58□□□□□ -0.24
FOXA1P55317 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms