Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 AC006987.1-201ENST00000413610 527 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 FDPSP7-201ENST00000429043 1054 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A1P27658 AL356000.1-201ENST00000441073 1238 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 B9D1-206ENST00000461069 923 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 AC092910.2-201ENST00000491262 348 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A1P27658 AC140658.4-201ENST00000561990 352 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 AP001462.1-201ENST00000594089 452 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 AC073869.4-201ENST00000620841 800 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC12.28□□□□□ -0.44
COL8A1P27658 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 AC090616.6-203ENST00000579186 1945 ntBASIC12.28□□□□□ -0.44
COL8A1P27658 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
COL8A1P27658 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
COL8A1P27658 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
COL8A1P27658 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
COL8A1P27658 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
COL8A1P27658 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.44
COL8A1P27658 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A1P27658 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A1P27658 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.27□□□□□ -0.44
COL8A1P27658 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
COL8A1P27658 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
COL8A1P27658 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC12.27□□□□□ -0.44
COL8A1P27658 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.27□□□□□ -0.45
COL8A1P27658 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 AC022080.1-201ENST00000366255 781 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 RN7SL173P-201ENST00000461853 292 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 PRSS3P1-201ENST00000503996 742 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 AC011431.1-201ENST00000512971 230 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC004923.3-201ENST00000527532 355 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC12.27□□□□□ -0.45
COL8A1P27658 DLK1-205ENST00000556051 469 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 MIR4746-201ENST00000579802 71 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 EEF1DP7-201ENST00000580496 513 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC12.27□□□□□ -0.45
COL8A1P27658 AC027281.2-201ENST00000623856 713 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC12.27□□□□□ -0.45
COL8A1P27658 ESR1-214ENST00000638569 132 ntTSL 5 BASIC12.27□□□□□ -0.45
COL8A1P27658 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.27□□□□□ -0.45
COL8A1P27658 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 AL008638.4-201ENST00000624792 1315 ntBASIC12.27□□□□□ -0.45
COL8A1P27658 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
COL8A1P27658 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
COL8A1P27658 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
COL8A1P27658 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms