Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HNRNPA1P10-201ENST00000444945 962 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC022447.6-201ENST00000515522 438 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 AC005740.1-201ENST00000515639 522 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.36□□□□□ -0.11
COL9A1P20849 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC087762.1-201ENST00000559755 643 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 AP001505.1-201ENST00000569966 824 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 SNORD3B-1-201ENST00000577988 758 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 DUX4L33-201ENST00000635217 958 ntBASIC14.36□□□□□ -0.11
COL9A1P20849 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL9A1P20849 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.36□□□□□ -0.11
COL9A1P20849 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.36□□□□□ -0.11
COL9A1P20849 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL9A1P20849 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL9A1P20849 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL9A1P20849 RNF7-202ENST00000393000 805 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC14.35□□□□□ -0.11
COL9A1P20849 AC138392.1-201ENST00000427577 921 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 MAP1LC3BP1-202ENST00000438342 516 ntTSL 3 BASIC14.35□□□□□ -0.11
COL9A1P20849 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 UGT1A12P-201ENST00000447084 853 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 RNU1-80P-201ENST00000459500 161 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 HNRNPA1P7-201ENST00000521273 963 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 AC021269.1-201ENST00000526860 705 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 ZNF826P-202ENST00000542380 1067 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 MIR4309-201ENST00000582498 83 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.35□□□□□ -0.11
COL9A1P20849 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 AL359091.4-201ENST00000610052 409 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 COG6-212ENST00000630730 186 ntTSL 5 BASIC14.35□□□□□ -0.11
COL9A1P20849 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL9A1P20849 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 AC011498.7-201ENST00000624986 2027 ntBASIC14.35□□□□□ -0.11
COL9A1P20849 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC14.35□□□□□ -0.11
COL9A1P20849 FOLR1-203ENST00000393679 1331 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 NBR2-202ENST00000460115 1344 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
COL9A1P20849 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL9A1P20849 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.34□□□□□ -0.11
COL9A1P20849 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL9A1P20849 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms