Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TRGV4-201ENST00000390345 688 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
VCANP13611 AL161932.2-201ENST00000435436 679 ntBASIC13.97□□□□□ -0.17
VCANP13611 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 AC109826.1-203ENST00000624259 1105 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 IFT43-202ENST00000314067 833 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 FAM204A-202ENST00000369172 872 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
VCANP13611 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 ENTPD1-AS1-210ENST00000452942 864 ntTSL 3 BASIC13.97□□□□□ -0.17
VCANP13611 OR7E126P-201ENST00000526217 888 ntBASIC13.97□□□□□ -0.17
VCANP13611 SSSCA1-203ENST00000526877 713 ntTSL 3 BASIC13.97□□□□□ -0.17
VCANP13611 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC13.97□□□□□ -0.17
VCANP13611 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 AC089987.1-201ENST00000551654 2209 ntBASIC13.97□□□□□ -0.17
VCANP13611 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 AC093462.1-201ENST00000621167 1683 ntBASIC13.97□□□□□ -0.17
VCANP13611 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 LANCL1-203ENST00000431941 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 HNRNPA1P30-202ENST00000440699 997 ntBASIC13.97□□□□□ -0.17
VCANP13611 TULP3P1-202ENST00000453253 1291 ntBASIC13.97□□□□□ -0.17
VCANP13611 SLC22A18AS-201ENST00000455942 697 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
VCANP13611 RN7SL789P-201ENST00000478944 293 ntBASIC13.97□□□□□ -0.17
VCANP13611 LINC02163-201ENST00000514769 574 ntTSL 4 BASIC13.97□□□□□ -0.17
VCANP13611 OVOL1-AS1-203ENST00000534178 493 ntTSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 KRT18P8-201ENST00000581937 1246 ntBASIC13.97□□□□□ -0.17
VCANP13611 PRKN-210ENST00000612540 603 ntTSL 5 BASIC13.97□□□□□ -0.17
VCANP13611 TNFSF13-209ENST00000625791 955 ntTSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
VCANP13611 AL109954.1-202ENST00000564051 2148 ntBASIC13.96□□□□□ -0.17
VCANP13611 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 PAGE4-202ENST00000376141 487 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 RN7SL229P-201ENST00000495651 299 ntBASIC13.96□□□□□ -0.17
VCANP13611 IGHVII-74-1-201ENST00000517572 241 ntBASIC13.96□□□□□ -0.17
VCANP13611 AC104506.1-201ENST00000609247 429 ntBASIC13.96□□□□□ -0.17
VCANP13611 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 AP006621.5-202ENST00000623692 636 ntBASIC13.96□□□□□ -0.17
VCANP13611 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 TBC1D3P1-201ENST00000590047 1693 ntBASIC13.96□□□□□ -0.17
VCANP13611 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
VCANP13611 MTA3-204ENST00000406911 2041 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
VCANP13611 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.96□□□□□ -0.17
VCANP13611 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC13.96□□□□□ -0.17
VCANP13611 AC002351.1-201ENST00000546852 590 ntTSL 2 BASIC13.96□□□□□ -0.17
VCANP13611 TINF2-210ENST00000559019 885 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
VCANP13611 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.17
VCANP13611 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
VCANP13611 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.96□□□□□ -0.18
VCANP13611 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 DNAJB8-202ENST00000469083 3365 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
VCANP13611 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 RAB13-201ENST00000368575 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC13.96□□□□□ -0.18
VCANP13611 TCP10-205ENST00000476779 646 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.18
VCANP13611 AC073592.1-201ENST00000543970 1282 ntTSL 3 BASIC13.96□□□□□ -0.18
VCANP13611 MT1G-204ENST00000569500 305 ntTSL 3 BASIC13.96□□□□□ -0.18
VCANP13611 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
VCANP13611 SNORA50D-202ENST00000627561 132 ntBASIC13.96□□□□□ -0.18
VCANP13611 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 AC019294.4-201ENST00000561777 2905 ntBASIC13.95□□□□□ -0.18
VCANP13611 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.95□□□□□ -0.18
VCANP13611 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
VCANP13611 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms