Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 RN7SL788P-201ENST00000460504 316 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 RN7SL455P-201ENST00000580629 282 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 DBP-202ENST00000593500 712 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC140113.1-201ENST00000603467 169 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AL359183.1-201ENST00000623796 2132 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 KRT8P18-201ENST00000413425 1445 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AC090502.4-201ENST00000551714 1386 ntBASIC12.93□□□□□ -0.34
LRFN1Q9P244 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
LRFN1Q9P244 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
LRFN1Q9P244 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC012362.1-201ENST00000434906 739 ntBASIC12.92□□□□□ -0.34
LRFN1Q9P244 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC004837.1-201ENST00000446267 564 ntBASIC12.92□□□□□ -0.34
LRFN1Q9P244 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 NEU3-207ENST00000534628 746 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 GAS7-216ENST00000583882 553 ntTSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AP005264.5-201ENST00000590066 467 ntBASIC12.92□□□□□ -0.34
LRFN1Q9P244 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 GMFG-209ENST00000600322 622 ntTSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 USP39-220ENST00000613444 2161 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 AL139158.3-201ENST00000641212 1562 ntBASIC12.92□□□□□ -0.34
LRFN1Q9P244 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms