Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 TUBB8P4-201ENST00000511806 1324 ntBASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
PDLIM3Q53GG5 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 LRRC59-203ENST00000576448 1531 ntBASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 DTX2P1-UPK3BP1-PMS2P11-203ENST00000636308 4646 ntTSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 POU5F2-201ENST00000606183 8418 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 CLUHP6-201ENST00000580789 941 ntBASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 RNF146-211ENST00000609447 607 ntTSL 4 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 AL096828.3-201ENST00000615354 462 ntBASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 AL136301.1-201ENST00000615830 422 ntBASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PDLIM3Q53GG5 FAM155A-201ENST00000375915 8503 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 FBN3-201ENST00000270509 9232 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AC006001.1-201ENST00000325130 474 ntBASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 UFM1-202ENST00000379649 846 ntTSL 4 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AL627389.1-201ENST00000413508 1182 ntBASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 POM121L10P-201ENST00000436994 1285 ntBASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 SPTLC1P5-201ENST00000450718 252 ntBASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC11.8□□□□□ -0.52
PDLIM3Q53GG5 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms