Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
SOX3P41225 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.32□□□□□ -0.28
SOX3P41225 AC011498.7-201ENST00000624986 2027 ntBASIC13.32□□□□□ -0.28
SOX3P41225 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
SOX3P41225 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
SOX3P41225 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 MEX3B-202ENST00000558133 4333 ntBASIC13.31□□□□□ -0.28
SOX3P41225 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 AC090643.2-201ENST00000623442 2029 ntBASIC13.31□□□□□ -0.28
SOX3P41225 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC13.31□□□□□ -0.28
SOX3P41225 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 AL161932.2-201ENST00000435436 679 ntBASIC13.31□□□□□ -0.28
SOX3P41225 AC073150.1-201ENST00000450406 1084 ntBASIC13.31□□□□□ -0.28
SOX3P41225 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC13.31□□□□□ -0.28
SOX3P41225 AL606495.2-201ENST00000605867 535 ntBASIC13.31□□□□□ -0.28
SOX3P41225 AC021016.3-201ENST00000608367 477 ntBASIC13.31□□□□□ -0.28
SOX3P41225 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 HSPA8P5-201ENST00000456928 2069 ntBASIC13.31□□□□□ -0.28
SOX3P41225 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 LINC01165-201ENST00000445190 1623 ntBASIC13.31□□□□□ -0.28
SOX3P41225 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.31□□□□□ -0.28
SOX3P41225 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
SOX3P41225 AC072061.1-201ENST00000569710 2234 ntBASIC13.31□□□□□ -0.28
SOX3P41225 AL118506.1-201ENST00000601296 3082 ntBASIC13.31□□□□□ -0.28
SOX3P41225 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
SOX3P41225 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.3□□□□□ -0.28
SOX3P41225 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC13.3□□□□□ -0.28
SOX3P41225 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 PDIA3P2-201ENST00000428073 158 ntBASIC13.3□□□□□ -0.28
SOX3P41225 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC13.3□□□□□ -0.28
SOX3P41225 UPF3AP2-201ENST00000457924 1132 ntBASIC13.3□□□□□ -0.28
SOX3P41225 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SOX3P41225 FGFR3P5-201ENST00000564496 886 ntBASIC13.3□□□□□ -0.28
SOX3P41225 MIR3188-201ENST00000583494 85 ntBASIC13.3□□□□□ -0.28
SOX3P41225 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.3□□□□□ -0.28
SOX3P41225 AC020922.3-201ENST00000595064 547 ntBASIC13.3□□□□□ -0.28
SOX3P41225 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms