Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 AL590440.2-201ENST00000641973 1595 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 CNTNAP3P2-201ENST00000617175 3861 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 SNRPCP15-201ENST00000424055 192 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 HMGA1P2-201ENST00000430198 324 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC006328.1-201ENST00000437571 379 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 RN7SL128P-201ENST00000467883 305 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC026412.1-206ENST00000502273 206 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 ISL1-203ENST00000511384 981 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 BAK1P2-201ENST00000532665 631 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 AC004801.1-201ENST00000549557 360 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC12.31□□□□□ -0.44
COL8A1P27658 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC12.31□□□□□ -0.44
COL8A1P27658 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC12.31□□□□□ -0.44
COL8A1P27658 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
COL8A1P27658 AC006986.1-201ENST00000612764 241 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 AC005746.3-201ENST00000614751 393 ntBASIC12.31□□□□□ -0.44
COL8A1P27658 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC12.31□□□□□ -0.44
COL8A1P27658 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL8A1P27658 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC12.31□□□□□ -0.44
COL8A1P27658 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 AC138761.6-201ENST00000583997 1423 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
COL8A1P27658 SSR1P1-201ENST00000407630 814 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 FAM21EP-201ENST00000417804 985 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 AL773545.2-201ENST00000442149 472 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 STK24P1-201ENST00000455035 1291 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 RN7SL578P-201ENST00000477781 283 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 AC110921.1-201ENST00000577544 612 ntTSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 AC016582.2-202ENST00000587765 1094 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC12.3□□□□□ -0.44
COL8A1P27658 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC12.3□□□□□ -0.44
COL8A1P27658 AL009176.1-201ENST00000607876 650 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 CSTP2-201ENST00000610599 398 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC12.3□□□□□ -0.44
COL8A1P27658 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
COL8A1P27658 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 SIGLEC20P-201ENST00000595243 1311 ntBASIC12.3□□□□□ -0.44
COL8A1P27658 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
COL8A1P27658 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms