Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 CU639417.3-201ENST00000624240 1404 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.05■□□□□ 0.16
ERCC4Q92889 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 NME2P1-201ENST00000426182 414 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 HOMER2P2-201ENST00000451621 847 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.05■□□□□ 0.16
ERCC4Q92889 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.05■□□□□ 0.16
ERCC4Q92889 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC021016.3-201ENST00000608367 477 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.05■□□□□ 0.16
ERCC4Q92889 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 RHOXF1P1-202ENST00000635473 501 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 BEND3P3-201ENST00000611030 2440 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.05■□□□□ 0.16
ERCC4Q92889 FAM13B-203ENST00000425075 3098 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ERCC4Q92889 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
ERCC4Q92889 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
ERCC4Q92889 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
ERCC4Q92889 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.04■□□□□ 0.16
ERCC4Q92889 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.04■□□□□ 0.16
ERCC4Q92889 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ERCC4Q92889 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.04■□□□□ 0.16
ERCC4Q92889 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.04■□□□□ 0.16
ERCC4Q92889 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms