Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.36□□□□□ -0.27
SOX3P41225 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.36□□□□□ -0.27
SOX3P41225 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SOX3P41225 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
SOX3P41225 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.35□□□□□ -0.27
SOX3P41225 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 ISCA2P1-201ENST00000425548 448 ntBASIC13.35□□□□□ -0.27
SOX3P41225 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 AL596276.2-201ENST00000447525 331 ntBASIC13.35□□□□□ -0.27
SOX3P41225 AL133466.1-201ENST00000447582 150 ntBASIC13.35□□□□□ -0.27
SOX3P41225 AC012618.1-201ENST00000461223 412 ntBASIC13.35□□□□□ -0.27
SOX3P41225 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.35□□□□□ -0.27
SOX3P41225 AC005586.2-201ENST00000563946 837 ntBASIC13.35□□□□□ -0.27
SOX3P41225 AC124068.2-201ENST00000569473 1109 ntBASIC13.35□□□□□ -0.27
SOX3P41225 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.35□□□□□ -0.27
SOX3P41225 CU633904.3-201ENST00000624042 1029 ntBASIC13.35□□□□□ -0.27
SOX3P41225 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.35□□□□□ -0.27
SOX3P41225 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SOX3P41225 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 AL031595.1-201ENST00000623969 4709 ntBASIC13.35□□□□□ -0.27
SOX3P41225 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
SOX3P41225 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SOX3P41225 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 NUP210P1-202ENST00000504322 710 ntBASIC13.34□□□□□ -0.27
SOX3P41225 AC245884.6-201ENST00000515672 1067 ntBASIC13.34□□□□□ -0.27
SOX3P41225 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 AL161670.2-201ENST00000557650 1227 ntBASIC13.34□□□□□ -0.27
SOX3P41225 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 AC091812.3-201ENST00000621362 345 ntBASIC13.34□□□□□ -0.27
SOX3P41225 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SOX3P41225 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.34□□□□□ -0.27
SOX3P41225 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.34□□□□□ -0.27
SOX3P41225 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SOX3P41225 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.33□□□□□ -0.27
SOX3P41225 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.33□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms