Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL5A1P20908 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 CCL25-202ENST00000315626 450 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL5A1P20908 SNORD88B-201ENST00000408454 91 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC13.09□□□□□ -0.31
COL5A1P20908 ISL1-203ENST00000511384 981 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC13.09□□□□□ -0.31
COL5A1P20908 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 AC139100.2-201ENST00000616901 662 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL5A1P20908 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
COL5A1P20908 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL5A1P20908 ASS1P1-201ENST00000402854 1237 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 SNORA50C-201ENST00000408535 133 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 PEBP1P3-201ENST00000455475 548 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
COL5A1P20908 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC13.09□□□□□ -0.31
COL5A1P20908 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC13.09□□□□□ -0.31
COL5A1P20908 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC13.09□□□□□ -0.31
COL5A1P20908 SNORA50.1-201ENST00000628590 135 ntBASIC13.09□□□□□ -0.31
COL5A1P20908 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL5A1P20908 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL5A1P20908 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
COL5A1P20908 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.08□□□□□ -0.31
COL5A1P20908 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.08□□□□□ -0.31
COL5A1P20908 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.08□□□□□ -0.31
COL5A1P20908 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
COL5A1P20908 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.08□□□□□ -0.32
COL5A1P20908 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.08□□□□□ -0.32
COL5A1P20908 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 AL356000.1-201ENST00000441073 1238 ntBASIC13.08□□□□□ -0.32
COL5A1P20908 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
COL5A1P20908 AC108724.1-201ENST00000481669 352 ntBASIC13.08□□□□□ -0.32
COL5A1P20908 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC13.08□□□□□ -0.32
COL5A1P20908 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC13.08□□□□□ -0.32
COL5A1P20908 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC13.08□□□□□ -0.32
COL5A1P20908 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 MIR6893-201ENST00000613458 69 ntBASIC13.08□□□□□ -0.32
COL5A1P20908 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms