Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AC006001.1-201ENST00000325130 474 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 MIR4741-201ENST00000579822 90 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AC145423.3-201ENST00000615987 467 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 DLX4-206ENST00000611342 1662 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AL138725.1-201ENST00000407347 1314 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AC104306.2-201ENST00000451877 341 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AL590640.2-201ENST00000457038 527 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 KRT8P13-201ENST00000463294 1010 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 BAP1-211ENST00000615113 489 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AP001002.3-201ENST00000623482 206 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 POM121L14P-201ENST00000406100 1558 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AC064801.2-201ENST00000625052 1303 ntBASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM55Q9BYV6 AP000437.1-201ENST00000624057 2085 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms