Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC4Q92889 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
ERCC4Q92889 COX5BP8-201ENST00000416911 349 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC4Q92889 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC4Q92889 GAPDHP21-201ENST00000450301 1010 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 CR383656.12-201ENST00000549567 513 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC4Q92889 RBM8B-201ENST00000555532 525 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.07■□□□□ 0.16
ERCC4Q92889 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.07■□□□□ 0.16
ERCC4Q92889 AC239800.4-201ENST00000603712 296 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC4Q92889 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 AP003969.2-201ENST00000623739 2275 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
ERCC4Q92889 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
ERCC4Q92889 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC4Q92889 FP325330.2-201ENST00000624219 5630 ntBASIC16.07■□□□□ 0.16
ERCC4Q92889 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ERCC4Q92889 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 DDC-214ENST00000622873 1839 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
ERCC4Q92889 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC4Q92889 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC4Q92889 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC4Q92889 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ERCC4Q92889 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
ERCC4Q92889 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC4Q92889 ARL16-210ENST00000574938 751 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 AC005962.1-201ENST00000584100 773 ntBASIC16.06■□□□□ 0.16
ERCC4Q92889 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC16.06■□□□□ 0.16
ERCC4Q92889 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
ERCC4Q92889 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
ERCC4Q92889 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 AP002761.4-201ENST00000565433 3361 ntBASIC16.06■□□□□ 0.16
ERCC4Q92889 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC4Q92889 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ERCC4Q92889 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 AL031719.1-201ENST00000623365 2587 ntBASIC16.05■□□□□ 0.16
ERCC4Q92889 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ERCC4Q92889 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
ERCC4Q92889 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms