Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 AL162727.3-201ENST00000635661 2787 ntBASIC14.01□□□□□ -0.17
COL6A3P12111 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC14.01□□□□□ -0.17
COL6A3P12111 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A3P12111 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 PRDX2-201ENST00000301522 987 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 AC022733.2-201ENST00000520487 531 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 ODF3-203ENST00000525282 764 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 AKR1B1P7-201ENST00000587229 952 ntBASIC14□□□□□ -0.17
COL6A3P12111 ARHGAP44-212ENST00000616670 884 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 SLC26A5-211ENST00000432958 2588 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 SDR16C5-203ENST00000522671 1988 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 SLC9A7P1-201ENST00000554295 3311 ntBASIC14□□□□□ -0.17
COL6A3P12111 HNRNPA1P46-201ENST00000411735 937 ntBASIC14□□□□□ -0.17
COL6A3P12111 AC011890.1-201ENST00000427955 303 ntBASIC14□□□□□ -0.17
COL6A3P12111 SYP-AS1-201ENST00000433499 542 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14□□□□□ -0.17
COL6A3P12111 LINC02354-202ENST00000548564 573 ntTSL 4 BASIC14□□□□□ -0.17
COL6A3P12111 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 ASMTL-AS1-205ENST00000602357 435 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 MYADML-201ENST00000474610 2147 ntBASIC14□□□□□ -0.17
COL6A3P12111 DHRS1-202ENST00000396813 1470 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
COL6A3P12111 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL6A3P12111 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14□□□□□ -0.17
COL6A3P12111 TRIM15-206ENST00000376688 426 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 AC091057.1-201ENST00000501830 970 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 AC211476.2-201ENST00000608799 708 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 KRTAP10-9-203ENST00000616529 615 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 UROD-221ENST00000636293 1102 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A3P12111 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A3P12111 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 GAMTP2-201ENST00000430917 463 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 MED15P7-201ENST00000435410 822 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 AL357140.1-201ENST00000454104 424 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A3P12111 RN7SL328P-201ENST00000484033 300 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 MGC32805-201ENST00000503529 579 ntTSL 3 BASIC13.99□□□□□ -0.17
COL6A3P12111 HNRNPA1P4-201ENST00000509706 756 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 AC008514.1-203ENST00000518172 574 ntTSL 4 BASIC13.99□□□□□ -0.17
COL6A3P12111 AP001922.5-201ENST00000527803 651 ntTSL 4 BASIC13.99□□□□□ -0.17
COL6A3P12111 AL137785.1-201ENST00000637466 490 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 MKRN7P-201ENST00000433469 1371 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 DBI-202ENST00000355857 637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 AL391987.4-201ENST00000377547 439 ntTSL 3 BASIC13.99□□□□□ -0.17
COL6A3P12111 FAM86DP-202ENST00000477247 995 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 RN7SL342P-201ENST00000479616 294 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 SNRPCP5-201ENST00000531775 189 ntBASIC13.99□□□□□ -0.17
COL6A3P12111 AC012572.1-201ENST00000581634 397 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A3P12111 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A3P12111 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A3P12111 ASS1-201ENST00000352480 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A3P12111 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A3P12111 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A3P12111 ITPKB-IT1-201ENST00000412918 746 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 AL450322.2-201ENST00000421629 759 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A3P12111 RPLP0P2-204ENST00000490750 961 ntBASIC13.98□□□□□ -0.17
COL6A3P12111 ASS1P9-201ENST00000513426 1236 ntBASIC13.98□□□□□ -0.17
COL6A3P12111 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC13.98□□□□□ -0.17
COL6A3P12111 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A3P12111 AC116553.1-201ENST00000561752 397 ntBASIC13.98□□□□□ -0.17
COL6A3P12111 AC007032.1-201ENST00000609281 847 ntBASIC13.98□□□□□ -0.17
COL6A3P12111 MDC1-209ENST00000613547 830 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A3P12111 AC009118.3-201ENST00000622896 873 ntBASIC13.98□□□□□ -0.17
COL6A3P12111 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms