Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 CHCHD2P2-201ENST00000503744 321 ntBASIC13.65□□□□□ -0.22
COL28A1Q2UY09 AC106047.2-201ENST00000511723 743 ntBASIC13.65□□□□□ -0.22
COL28A1Q2UY09 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 AC018846.1-201ENST00000568231 183 ntBASIC13.65□□□□□ -0.22
COL28A1Q2UY09 RN7SL357P-201ENST00000581065 298 ntBASIC13.65□□□□□ -0.22
COL28A1Q2UY09 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 TCAF1P1-201ENST00000414990 2232 ntBASIC13.65□□□□□ -0.22
COL28A1Q2UY09 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL28A1Q2UY09 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
COL28A1Q2UY09 INTS4P1-203ENST00000641008 3683 ntBASIC13.65□□□□□ -0.23
COL28A1Q2UY09 AL138725.1-201ENST00000407347 1314 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CICP8-201ENST00000455800 2813 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PTGER4P2-201ENST00000328411 252 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 KRT17P5-201ENST00000332088 839 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PTGER4P3-201ENST00000458150 252 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PPIA-208ENST00000489459 907 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 GOLGA2P7-209ENST00000560408 745 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC007952.4-201ENST00000573866 637 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 RN7SL121P-201ENST00000584223 273 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC010976.2-201ENST00000609697 852 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC010503.4-201ENST00000615487 688 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PPIA-210ENST00000620047 827 ntTSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 AC133540.1-201ENST00000620845 1019 ntBASIC13.64□□□□□ -0.23
COL28A1Q2UY09 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.64□□□□□ -0.23
COL28A1Q2UY09 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.63□□□□□ -0.23
COL28A1Q2UY09 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms