Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 LINC01165-201ENST00000445190 1623 ntBASIC16.6■□□□□ 0.25
MRE11P49959 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
MRE11P49959 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 MSNP1-201ENST00000511640 1732 ntBASIC16.6■□□□□ 0.25
MRE11P49959 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.6■□□□□ 0.25
MRE11P49959 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.6■□□□□ 0.25
MRE11P49959 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 MTND6P24-201ENST00000440466 518 ntBASIC16.6■□□□□ 0.25
MRE11P49959 AC006033.1-201ENST00000440505 426 ntBASIC16.6■□□□□ 0.25
MRE11P49959 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 ZNF890P-202ENST00000530367 1156 ntBASIC16.6■□□□□ 0.25
MRE11P49959 AC105129.2-201ENST00000559536 390 ntBASIC16.6■□□□□ 0.25
MRE11P49959 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.6■□□□□ 0.25
MRE11P49959 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.6■□□□□ 0.25
MRE11P49959 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.6■□□□□ 0.25
MRE11P49959 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.6■□□□□ 0.25
MRE11P49959 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MRE11P49959 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 AL355334.1-201ENST00000417713 215 ntBASIC16.59■□□□□ 0.25
MRE11P49959 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 RPL13P2-201ENST00000440687 659 ntBASIC16.59■□□□□ 0.25
MRE11P49959 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC16.59■□□□□ 0.25
MRE11P49959 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.59■□□□□ 0.25
MRE11P49959 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 WFDC1-204ENST00000613603 549 ntBASIC16.59■□□□□ 0.25
MRE11P49959 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.59■□□□□ 0.25
MRE11P49959 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MRE11P49959 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC16.59■□□□□ 0.25
MRE11P49959 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MRE11P49959 SALL4P5-201ENST00000419001 1760 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms