Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 AL365209.1-201ENST00000624418 6473 ntBASIC14.64□□□□□ -0.07
PTPN9P43378 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
PTPN9P43378 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.64□□□□□ -0.07
PTPN9P43378 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 TSACC-208ENST00000481479 741 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.64□□□□□ -0.07
PTPN9P43378 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 AL353770.1-201ENST00000614915 403 ntBASIC14.64□□□□□ -0.07
PTPN9P43378 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.64□□□□□ -0.07
PTPN9P43378 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PTPN9P43378 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 SBF1P1-201ENST00000444527 5631 ntBASIC14.64□□□□□ -0.07
PTPN9P43378 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
PTPN9P43378 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 AC105206.1-202ENST00000314927 2368 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 FAM90A2P-201ENST00000511144 1395 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 FAM90A25P-201ENST00000528404 1395 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PTPN9P43378 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.63□□□□□ -0.07
PTPN9P43378 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.63□□□□□ -0.07
PTPN9P43378 MIR557-201ENST00000385239 98 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PTPN9P43378 NUP210P1-202ENST00000504322 710 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 KLF17P1-201ENST00000547105 1126 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.63□□□□□ -0.07
PTPN9P43378 RN7SL574P-201ENST00000581512 297 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 AC138627.1-207ENST00000641560 1006 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 KRT8P18-201ENST00000413425 1445 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.63□□□□□ -0.07
PTPN9P43378 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 AC020917.4-201ENST00000623994 1999 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PTPN9P43378 AC005252.3-201ENST00000623855 2258 ntBASIC14.63□□□□□ -0.07
PTPN9P43378 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.63□□□□□ -0.07
PTPN9P43378 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PTPN9P43378 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms