Protein–RNA interactions for Protein: Q9Y5G7

PCDHGA6, Protocadherin gamma-A6, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA6Q9Y5G7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 AC092171.4-201ENST00000609130 632 ntBASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 DUSP8P5-201ENST00000422884 1815 ntBASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.61■■□□□ 1.05
PCDHGA6Q9Y5G7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 AC131274.2-201ENST00000580697 1507 ntBASIC21.6■■□□□ 1.05
PCDHGA6Q9Y5G7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 AC004812.2-201ENST00000611079 2094 ntBASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
PCDHGA6Q9Y5G7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PCDHGA6Q9Y5G7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.58■■□□□ 1.04
PCDHGA6Q9Y5G7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
PCDHGA6Q9Y5G7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 AC079834.2-201ENST00000609776 1949 ntBASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 MIR6089-201ENST00000616698 64 ntBASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA6Q9Y5G7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 RARRES2P6-201ENST00000567333 442 ntBASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PCDHGA6Q9Y5G7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA6Q9Y5G7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 AL136967.2-201ENST00000623968 743 ntBASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA6Q9Y5G7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 SYT6-210ENST00000641643 1587 ntBASIC21.53■■□□□ 1.04
PCDHGA6Q9Y5G7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA6Q9Y5G7 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA6Q9Y5G7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA6Q9Y5G7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms