Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDH9Q9HC56 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 C1orf229-201ENST00000623686 2258 ntBASIC23.23■■□□□ 1.31
PCDH9Q9HC56 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDH9Q9HC56 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PCDH9Q9HC56 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 MIR4787-201ENST00000607364 84 ntBASIC23.21■■□□□ 1.31
PCDH9Q9HC56 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
PCDH9Q9HC56 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PCDH9Q9HC56 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDH9Q9HC56 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDH9Q9HC56 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.2■■□□□ 1.3
PCDH9Q9HC56 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PCDH9Q9HC56 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 AC004448.1-201ENST00000458332 883 ntBASIC23.19■■□□□ 1.3
PCDH9Q9HC56 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PCDH9Q9HC56 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.18■■□□□ 1.3
PCDH9Q9HC56 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 SNX5-217ENST00000606557 1087 ntBASIC23.18■■□□□ 1.3
PCDH9Q9HC56 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PCDH9Q9HC56 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 AC092028.1-203ENST00000608262 953 ntBASIC23.17■■□□□ 1.3
PCDH9Q9HC56 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PCDH9Q9HC56 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
PCDH9Q9HC56 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
PCDH9Q9HC56 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms