Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
USP42Q9H9J4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.84■■■□□ 2.21
USP42Q9H9J4 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.84■■■□□ 2.21
USP42Q9H9J4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC28.84■■■□□ 2.21
USP42Q9H9J4 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC28.84■■■□□ 2.21
USP42Q9H9J4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USP42Q9H9J4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
USP42Q9H9J4 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 NME4-202ENST00000382940 766 ntTSL 3 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 AC027612.3-201ENST00000413684 1047 ntBASIC28.83■■■□□ 2.21
USP42Q9H9J4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USP42Q9H9J4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.83■■■□□ 2.21
USP42Q9H9J4 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
USP42Q9H9J4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
USP42Q9H9J4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP42Q9H9J4 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP42Q9H9J4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.82■■■□□ 2.2
USP42Q9H9J4 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
USP42Q9H9J4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.81■■■□□ 2.2
USP42Q9H9J4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC28.81■■■□□ 2.2
USP42Q9H9J4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.81■■■□□ 2.2
USP42Q9H9J4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USP42Q9H9J4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP42Q9H9J4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC28.8■■■□□ 2.2
USP42Q9H9J4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP42Q9H9J4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC28.8■■■□□ 2.2
USP42Q9H9J4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
USP42Q9H9J4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USP42Q9H9J4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC28.8■■■□□ 2.2
USP42Q9H9J4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USP42Q9H9J4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USP42Q9H9J4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USP42Q9H9J4 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
USP42Q9H9J4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
USP42Q9H9J4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC28.79■■■□□ 2.2
USP42Q9H9J4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
USP42Q9H9J4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
USP42Q9H9J4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
USP42Q9H9J4 AC123595.1-201ENST00000440769 1046 ntBASIC28.78■■■□□ 2.2
USP42Q9H9J4 AL358852.1-201ENST00000623174 1268 ntBASIC28.78■■■□□ 2.2
USP42Q9H9J4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC28.78■■■□□ 2.2
USP42Q9H9J4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
USP42Q9H9J4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.78■■■□□ 2.2
USP42Q9H9J4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC28.78■■■□□ 2.2
USP42Q9H9J4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.77■■■□□ 2.2
USP42Q9H9J4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC28.77■■■□□ 2.2
USP42Q9H9J4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USP42Q9H9J4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.77■■■□□ 2.2
USP42Q9H9J4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USP42Q9H9J4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC28.77■■■□□ 2.2
USP42Q9H9J4 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.2
USP42Q9H9J4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.76■■■□□ 2.2
USP42Q9H9J4 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
USP42Q9H9J4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.76■■■□□ 2.19
USP42Q9H9J4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
USP42Q9H9J4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.19
USP42Q9H9J4 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC28.76■■■□□ 2.19
USP42Q9H9J4 AP003733.4-201ENST00000623785 1697 ntBASIC28.76■■■□□ 2.19
USP42Q9H9J4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP42Q9H9J4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP42Q9H9J4 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP42Q9H9J4 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USP42Q9H9J4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC28.75■■■□□ 2.19
USP42Q9H9J4 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USP42Q9H9J4 IGHV3-19-201ENST00000521488 291 ntBASIC28.74■■■□□ 2.19
USP42Q9H9J4 MIR6084-201ENST00000622012 110 ntBASIC28.74■■■□□ 2.19
USP42Q9H9J4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USP42Q9H9J4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 397.3 ms