Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AC091060.1-201ENST00000623524 1766 ntBASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AC011767.1-201ENST00000617410 1153 ntBASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AP004607.4-201ENST00000530158 1459 ntBASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC27.05■■□□□ 1.92
SMC1BQ8NDV3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 AL121832.2-201ENST00000610979 668 ntBASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.04■■□□□ 1.92
SMC1BQ8NDV3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SMC1BQ8NDV3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SMC1BQ8NDV3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
SMC1BQ8NDV3 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC27.03■■□□□ 1.92
SMC1BQ8NDV3 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
SMC1BQ8NDV3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 AC105233.4-201ENST00000642045 216 ntBASIC27.02■■□□□ 1.92
SMC1BQ8NDV3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 AC004854.2-201ENST00000608450 1441 ntBASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 AC087239.1-201ENST00000622671 572 ntBASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC27.01■■□□□ 1.91
SMC1BQ8NDV3 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMC1BQ8NDV3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC27■■□□□ 1.91
SMC1BQ8NDV3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27■■□□□ 1.91
SMC1BQ8NDV3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMC1BQ8NDV3 KRT18P11-201ENST00000435214 1283 ntBASIC27■■□□□ 1.91
SMC1BQ8NDV3 TSPY6P-201ENST00000448518 926 ntBASIC27■■□□□ 1.91
SMC1BQ8NDV3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC27■■□□□ 1.91
SMC1BQ8NDV3 DUX4L4-201ENST00000566884 1269 ntBASIC27■■□□□ 1.91
SMC1BQ8NDV3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
SMC1BQ8NDV3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC27■■□□□ 1.91
SMC1BQ8NDV3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 KRT19P1-201ENST00000405746 1186 ntBASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.99■■□□□ 1.91
SMC1BQ8NDV3 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
SMC1BQ8NDV3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 AC083906.2-201ENST00000511578 360 ntBASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 AC141586.4-201ENST00000624558 1573 ntBASIC26.97■■□□□ 1.91
SMC1BQ8NDV3 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 AC097639.1-201ENST00000565519 1891 ntBASIC26.96■■□□□ 1.91
SMC1BQ8NDV3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SMC1BQ8NDV3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
SMC1BQ8NDV3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SMC1BQ8NDV3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
SMC1BQ8NDV3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.95■■□□□ 1.9
SMC1BQ8NDV3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
SMC1BQ8NDV3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.95■■□□□ 1.9
SMC1BQ8NDV3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms